BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC4ZC05RM1.SCF screened BAC_end
(956 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1620 664 0.0
>3x_Contig1620
Length = 12263
Score = 664 bits (335), Expect = 0.0
Identities = 380/395 (96%)
Strand = Plus / Plus
Query: 46 tttgttttctgacttccgtaaggcttcgtacaattttctagtggtggaatctctaactag 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6307 tttgttttctgacttccgtaaggcttcgtacaattttctagtggtggaatctctaactag 6366
Query: 106 tgatattggacgtgtgaacaattcattgaattgattttgcttgaatgaacccagacgata 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6367 tgatattggacgtgtgaacaattcattgaattgattttgcttgaatgaacccagacgata 6426
Query: 166 caagaattgtaattgctgctctgagaaagaatggacatctgcggcactgatgttattagg 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6427 caagaattgtaattgctgctctgagaaagaatggacatctgcggcactgatgttattagg 6486
Query: 226 attaaacatgggcagatcgacaaaagttgcatttttatgtaaattagccgttgcaacagc 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6487 attaaacatgggcagatcgacaaaagttgcatttttatgtaaattagccgttgcaacagc 6546
Query: 286 tggttgccatctcttatacatggaaccaggaataattcttttggctgctgcctttgttcc 345
||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct: 6547 tggttgccatctcttatacatggaaccaggagtaattcttttggctgctgccttagttcc 6606
Query: 346 tgattgagccttaccgaaccctggggctttctttttaactggagcctctacttgaccact 405
||||||||||||| |||||||| |||||||||| ||| ||| |||||||||| | ||||
Sbjct: 6607 tgattgagccttagcgaacccttgggctttcttcttagctgcagcctctactgcagcact 6666
Query: 406 gaaggaaaactgcctggtatttattctcaccatga 440
| |||| ||||| ||||||| |||||||| |||||
Sbjct: 6667 gcaggagaactgtctggtatgtattctcaacatga 6701
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 17,661
Number of Sequences: 1807
Number of extensions: 17661
Number of successful extensions: 249
Number of sequences better than 1.0e-20: 1
length of query: 956
length of database: 10,358,551
effective HSP length: 16
effective length of query: 940
effective length of database: 10,329,639
effective search space: 9709860660
effective search space used: 9709860660
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)