BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC4ZC06FM1.SCF screened BAC_end
(972 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1270 803 0.0
>3x_Contig1270
Length = 7505
Score = 803 bits (405), Expect = 0.0
Identities = 458/469 (97%), Gaps = 5/469 (1%)
Strand = Plus / Plus
Query: 82 ctgcaaactcctgatcctctcattgatatcagtagccctaggggacttgctttgggctaa 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 ctgcaaactcctgatcctctcattgatatcagtagccctaggggacttgctttgggctaa 318
Query: 142 cctggcttgtcgagacctgtaaaactgcttagcaagctcaatcttgccaggaatcgactt 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 cctggcttgtcgagacctgtaaaactgcttagcaagctcaatcttgccaggaatcgactt 378
Query: 202 caaatctgtttatt-atacttggacatgttgcactggttgtttgtctcaactgatgtaac 260
||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 caaatctgtaaatttaaacttggacatgttgcactggttgtttgtctcaactgatgtaac 438
Query: 261 aactaccaacttcaaagtaaactaaactcttaactgacatttgtgtattgtgtttcggta 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 aactaccaacttcaaagtaaactaaactcttaactgacatttgtgtattgtgtttcggta 498
Query: 321 tttaaaggtttacttctccaatattcttaggttctttaaatattaaggcttttcggtttt 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tttaaaggtttacttctccaatattcttaggttctttaaatattaaggcttttcggtttt 558
Query: 381 aatgttatccggtgaagaccagcgatgggcatgaagaaaaagcatttaaaaaccgtttaa 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 559 aatgttatccggtgaagaccagcgatgggcatgaagaaaaagcatttaaaaaccg-ttaa 617
Query: 441 agggcccactaactgctcaattggtttagtctgacaagttatcatggcttactgtcaagt 500
| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 618 aaggcccactaactgctcaattggtttagtttgacaagttatcatggcttactgtcaagt 677
Query: 501 ggttatcttcaaaagagattctggatgcctgtgttacaaattggtttcc 549
||||||| || |||||||||||||||| ||||||||| |||||||||||
Sbjct: 678 ggttatc-tcgaaagagattctggatg-ctgtgttac-aattggtttcc 723
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6732
Number of Sequences: 1807
Number of extensions: 6732
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 972
length of database: 10,358,551
effective HSP length: 16
effective length of query: 956
effective length of database: 10,329,639
effective search space: 9875134884
effective search space used: 9875134884
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)