BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC4ZC06RM1.SCF screened BAC_end
(923 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1374 446 e-125
>3x_Contig1374
Length = 8985
Score = 446 bits (225), Expect = e-125
Identities = 225/225 (100%)
Strand = Plus / Plus
Query: 136 ctgtagtatctgtctctcaggatcgtaagtgaaatggccagaggaggatttcattataat 195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6321 ctgtagtatctgtctctcaggatcgtaagtgaaatggccagaggaggatttcattataat 6380
Query: 196 gttgtcaagtttgaaatgatatgccggcagaaatatcaaagatctgttactggaagacgc 255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6381 gttgtcaagtttgaaatgatatgccggcagaaatatcaaagatctgttactggaagacgc 6440
Query: 256 gtgaccatgaatttccaaatcgtaagtgctgttgaagggatcaaattttgctgaaatgaa 315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6441 gtgaccatgaatttccaaatcgtaagtgctgttgaagggatcaaattttgctgaaatgaa 6500
Query: 316 ggatccactaatcttaattggagatggtctcaaaacagaatctaa 360
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6501 ggatccactaatcttaattggagatggtctcaaaacagaatctaa 6545
Score = 383 bits (193), Expect = e-106
Identities = 266/288 (92%), Gaps = 3/288 (1%)
Strand = Plus / Plus
Query: 372 cactatagtctattagtgcaatgccgttatttgccgttttgaaagtattggctgatttag 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6546 cactatagtctattagtgcaatgccgttatttgccgttttgaaagtattggctgatttag 6605
Query: 432 ttgatcttgttgatcctgaaagtgaagagaaaatttctgattcctgtaaggataccgttt 491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6606 ttgatcttgttgatcctgaaagtgaagagaaaatttctgattcctgtaaggataccgttt 6665
Query: 492 cactaccaagatgcggaacttctacagtcactttttcccttttaccatcattcggactcc 551
|||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||
Sbjct: 6666 cactaccaagatgcggaacttctacagtcactttttcccttttagcatcatcggaactcc 6725
Query: 552 caagtgagaaattttcgtttatttcctttgatcgccccattgatgaaaatttttccagca 611
||||||||||| |||||| |||| ||||||||||||||||||| | |||||| ||||
Sbjct: 6726 aaagtgagaaatcttcgtt--attccattgatcgccccattgatgagagtttttcgagca 6783
Query: 612 at-tcccccaagagaaaaggatcggttgttattttcccaaacgaatcc 658
|| | || ||||||||| ||| |||||||||| ||| || |||||||
Sbjct: 6784 ataacaccaaagagaaaatgataggttgttattctccaaagcgaatcc 6831
Score = 165 bits (83), Expect = 2e-40
Identities = 83/83 (100%)
Strand = Plus / Plus
Query: 42 cttaatccttttatgagataacacagctgtcctcatttgctgtcacattgattaaagaaa 101
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6237 cttaatccttttatgagataacacagctgtcctcatttgctgtcacattgattaaagaaa 6296
Query: 102 tgttcaaaaactgatggccaggt 124
|||||||||||||||||||||||
Sbjct: 6297 tgttcaaaaactgatggccaggt 6319
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8468
Number of Sequences: 1807
Number of extensions: 8468
Number of successful extensions: 74
Number of sequences better than 1.0e-20: 1
length of query: 923
length of database: 10,358,551
effective HSP length: 16
effective length of query: 907
effective length of database: 10,329,639
effective search space: 9368982573
effective search space used: 9368982573
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)