BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC4ZC07FM1.SCF screened BAC_end
(894 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1635 1170 0.0
3x_Contig40 190 3e-48
>3x_Contig1635
Length = 12349
Score = 1170 bits (590), Expect = 0.0
Identities = 714/745 (95%), Gaps = 8/745 (1%)
Strand = Plus / Plus
Query: 85 tgatccatgaaggatattcggtggaaaaggtccatgaattaaccaaaattgactcatggt 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1764 tgatccatgaaggatattcggtggaaaaggtccatgaattaaccaaaattgactcatggt 1823
Query: 145 tcctattcaagtgtatgaacatagtcgacatgtataaagatttggaacaggttaatgacc 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1824 tcctattcaagtgtatgaacatagtcgacatgtataaagatttggaacaggttaatgacc 1883
Query: 205 tggaatctttggacaaagaactgctacttgaagcgaagaaactaggtttctctgatgctc 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1884 tggaatctttggacaaagaactgctacttgaagcgaagaaactaggtttctctgatgctc 1943
Query: 265 aaatcgcactatgtttgaacaagggtagtgactcaagaacctcagaattagaagttagaa 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1944 aaatcgcactatgtttgaacaagggtagtgactcaagaacctcagaattagaagttagaa 2003
Query: 325 gttacagaaaatcctttggaatcgttccgtttgtcaaacgaattgacaccctagccgcag 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2004 gttacagaaaatcctttggaatcgttccgtttgtcaaacgaattgacaccctagccgcag 2063
Query: 385 aattccctgctcaaacaaactatttatacactacttacaatgctactaagagtgatatcg 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2064 aattccctgctcaaacaaactatttatacactacttacaatgctactaagagtgatatcg 2123
Query: 445 aattcactgataatggtgttctagtgctcggctcaggtgtctacagaataggttcaagtg 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2124 aattcactgataatggtgttctagtgctcggctcaggtgtctacagaataggttcaagtg 2183
Query: 505 tggaattcgattggtgtgctgttaacaccacanaggccctcagaaaagaagggaagaaaa 564
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 2184 tggaattcgattggtgtgctgttaacaccacaaaggccctcagaaaagaagggaagaaaa 2243
Query: 565 ctattatgataaattacaatcctgaaacggttttcacagattttgatgaaagtgacagat 624
||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct: 2244 ctattatgataaattacaatcctgaaacggtttccacagattttgatgaagttgacagat 2303
Query: 625 tgtattttgaagaacttttttttcgagcgtgtcatggatatttacgagttggaagatttc 684
||||||| ||||||| | | |||||||||||||||||||||||||||||||| ||| |||
Sbjct: 2304 tgtatttcgaagaac-tctctttcgagcgtgtcatggatatttacgagttgg-agaattc 2361
Query: 685 tgaaggttgggtcatctccggttggtggtcaactttcaccagaacattgtttttgaaact 744
||||||||| ||||||||| ||||||||||||||| || |||||||| | |||||||||
Sbjct: 2362 tgaaggttgtgtcatctcc-gttggtggtcaacttcca-cagaacatcg-ctttgaaact 2418
Query: 745 tctttacaatggtgcttaactatttgggtaccttttcttgaaaacattgacaagggtgaa 804
|||| ||||||||||| | || ||||||||| | || |||| |||||||||||| ||||
Sbjct: 2419 tcttcacaatggtgctcacata-ttgggtacc-tctcctgaagacattgacaaggctgaa 2476
Query: 805 aacaaaaaccaagttttcaactatt 829
|||| | | |||||| |||||||||
Sbjct: 2477 aacagaca-caagttctcaactatt 2500
>3x_Contig40
Length = 946
Score = 190 bits (96), Expect = 3e-48
Identities = 282/344 (81%)
Strand = Plus / Minus
Query: 115 tccatgaattaaccaaaattgactcatggttcctattcaagtgtatgaacatagtcgaca 174
||||| |||||||||||||| |||||| ||||||||||| | ||| |||||| || |||
Sbjct: 431 tccattaattaaccaaaatttactcatttttcctattcaattttattaacatattctaca 372
Query: 175 tgtataaagatttggaacaggttaatgacctggaatctttggacaaagaactgctacttg 234
| |||||| |||| |||| ||||| |||| ||||||| ||||| |||| ||||||
Sbjct: 371 tttataaatatttttaacattttaattacctttaatctttttacaaataacttctacttt 312
Query: 235 aagcgaagaaactaggtttctctgatgctcaaatcgcactatgtttgaacaagggtagtg 294
|| | || |||||| ||||||| || |||||||| |||||| ||| ||||| || |
Sbjct: 311 aatctaataaactatttttctcttattctcaaatctcactattttttaacaattttattt 252
Query: 295 actcaagaacctcagaattagaagttagaagttacagaaaatcctttggaatcgttccgt 354
|||||| ||||||| ||||| || ||| || ||||| |||||||||| |||| |||| |
Sbjct: 251 actcaataacctcataattataatttataatttacataaaatcctttttaatctttcctt 192
Query: 355 ttgtcaaacgaattgacaccctagccgcagaattccctgctcaaacaaactatttataca 414
|| |||||| |||| |||||||| || || |||||||| |||||||||||||||||||||
Sbjct: 191 ttttcaaactaatttacaccctatcctcataattcccttctcaaacaaactatttataca 132
Query: 415 ctacttacaatgctactaagagtgatatcgaattcactgataat 458
||||||||||| ||||||| | | ||||| |||||||| |||||
Sbjct: 131 ctacttacaattctactaatatttatatctaattcacttataat 88
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7256
Number of Sequences: 1807
Number of extensions: 7256
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 2
length of query: 894
length of database: 10,358,551
effective HSP length: 16
effective length of query: 878
effective length of database: 10,329,639
effective search space: 9069423042
effective search space used: 9069423042
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)