BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC4ZC07RM1.SCF screened BAC_end
         (928 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1779                                                        1231   0.0  

>3x_Contig1779 
          Length = 24855

 Score = 1231 bits (621), Expect = 0.0
 Identities = 688/700 (98%), Gaps = 9/700 (1%)
 Strand = Plus / Plus

                                                                         
Query: 48    tgcggtgatgaattatccttatcagtgtcaaagttttctgcaaactgtctaggtgcatgt 107
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13070 tgcggtgatgaattatccttatcagtgtcaaagttttctgcaaactgtctaggtgcatgt 13129

                                                                         
Query: 108   agtgtcttattgaactacctaaacataatgaataacgaggccaacgttggaaactttgaa 167
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13130 agtgtcttattgaactacctaaacataatgaataacgaggccaacgttggaaactttgaa 13189

                                                                         
Query: 168   gttgtggatcactctctttcgcaatttgtaaagttag--atgcttctgcaatcaaagcac 225
             ||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||
Sbjct: 13190 gttgtggatcactctctttcgcaatttgtaaagttacgtatgcttctgcaatcaaagcac 13249

                                                                         
Query: 226   taaatgtgttccccacaggctcacagggtaatactgctcttttaagcgtcggctctcctc 285
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13250 taaatgtgttccccacaggctcacagggtaatactgctcttttaagcgtcggctctcctc 13309

                                                                         
Query: 286   aaaaatgttcaagtcttttccagttgttgaatagatgtaaaactaattccggcgtaaggt 345
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13310 aaaaatgttcaagtcttttccagttgttgaatagatgtaaaactaattccggcgtaaggt 13369

                                                                         
Query: 346   tgttgaacgagtggctgaagcaacccttgaccgacatcgaccagattaccaaaaggcatg 405
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13370 tgttgaacgagtggctgaagcaacccttgaccgacatcgaccagattaccaaaaggcatg 13429

                                                                         
Query: 406   atctagttgaatttttcatggatcagttagaattaagatcttctctacaagaagaatgct 465
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13430 atctagttgaatttttcatggatcagttagaattaagatcttctctacaagaagaatgct 13489

                                                                         
Query: 466   tacctagtgttccagatatccgcagactaacaaagaaacttcaaaaaaatgggaacttag 525
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13490 tacctagtgttccagatatccgcagactaacaaagaaacttcaaaaaaatgggaacttag 13549

                                                                         
Query: 526   aagatgttctcaagatttatcagtttgcacaaatggttccagttatttcagatctgttga 585
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13550 aagatgttctcaagatttatcagtttgcacaaatggttccagttatttcagatctgttga 13609

                                                                         
Query: 586   aacagaagaccgaagaggttgattctaatgatttaatgatactcgtgaaagaaggtttac 645
             |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 13610 aacagaagaccgaagaggttgattctaatgatttaatgatactcgtgaaagaggttttac 13669

                                                                         
Query: 646   tcgatccaatgttatgaaaatgcaaatccttcttgagaaattgaaagaagttggtagaga 705
             |||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 13670 tcgatccaatgtta-gaaaatgcaaatcc-tcttgagaaattgaaag-agttggtagaga 13726

                                                     
Query: 706   ccactggttgatcttagaaggcttacgagggaaacaaatg 745
             ||||| ||||||| ||||| |||||||| |||||||||||
Sbjct: 13727 ccact-gttgatc-tagaa-gcttacga-ggaaacaaatg 13762


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7744
Number of Sequences: 1807
Number of extensions: 7744
Number of successful extensions: 56
Number of sequences better than 1.0e-20: 1
length of query: 928
length of database: 10,358,551
effective HSP length: 16
effective length of query: 912
effective length of database: 10,329,639
effective search space: 9420630768
effective search space used: 9420630768
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)