BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC4ZC08FM1.SCF screened BAC_end
(1114 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig619 363 e-100
3x_Contig1133 119 1e-26
>3x_Contig619
Length = 1987
Score = 363 bits (183), Expect = e-100
Identities = 306/333 (91%), Gaps = 13/333 (3%)
Strand = Plus / Plus
Query: 122 ttgtatttcaatactttgttgttgcgatattctgctcaaagaatctgccaacggattaga 181
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttgtatttcaacactttgttgttgcgatattctgctcaaagaatctgccaacggattaga 60
Query: 182 gaatcttctaacattagtgtattctctagaaattcttttatattctcttctcacctccac 241
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 61 gaatcttctaacattagtgtattctctagaaattctttcaaattctcttctcacctccac 120
Query: 242 attcgaggccaagaacactgcatcaggagaggtgttttgactgcttagatcttgtattga 301
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 attcgaggccaagaacactgcatcaggagaggtgttttgactgcttagatcttgtattg- 179
Query: 302 aattttctttttgcaacccattacttttgttgtgttttttgagttagtttccgacgtttt 361
|||||||| ||||||| |||| |||||||||||| || |||||| || |||||||| |
Sbjct: 180 aattttctctttgcaa-ccataacttttgttgtg-ttcttgagtcag-ttccgacg--tc 234
Query: 362 tcctatttgcaaaaatgaccagaaattcggtcatgccattaaccgctgggtattcattct 421
||| ||||||||||||| ||||| || ||||||||||| |||||| |||| |||||||
Sbjct: 235 tccgtattgcaaaaatgacgagaaa-tctgtcatgccatt-accgct-ggta-tcattct 290
Query: 422 ccactgtacgatggtttgcccgatagagtgatt 454
||||||||||||||| ||||||||||||||
Sbjct: 291 -cactgtacgatggtt--gccgatagagtgatt 320
>3x_Contig1133
Length = 4723
Score = 119 bits (60), Expect = 1e-26
Identities = 60/60 (100%)
Strand = Plus / Plus
Query: 87 cctgcgttctcacccgtgctaattttcttttgtttttgtatttcaatactttgttgttgc 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4664 cctgcgttctcacccgtgctaattttcttttgtttttgtatttcaatactttgttgttgc 4723
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 16,889
Number of Sequences: 1807
Number of extensions: 16889
Number of successful extensions: 348
Number of sequences better than 1.0e-20: 2
length of query: 1114
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1098
effective length of database: 10,329,639
effective search space: 11341943622
effective search space used: 11341943622
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)