BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC4ZC08RM1.SCF screened BAC_end
         (1011 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1698                                                         864   0.0  

>3x_Contig1698 
          Length = 21001

 Score =  864 bits (436), Expect = 0.0
 Identities = 478/487 (98%), Gaps = 4/487 (0%)
 Strand = Plus / Plus

                                                                         
Query: 45    ctttcttggattcaaaaccttcaacaatgctaccaacgtcaaatcgaaatatgacaaaaa 104
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15086 ctttcttggattcaaaaccttcaacaatgctaccaacgtcaaatcgaaatatgacaaaaa 15145

                                                                         
Query: 105   ttcatcaacgaactggcctttattaaactgtacaatctctgtcattaacccaaatactga 164
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15146 ttcatcaacgaactggcctttattaaactgtacaatctctgtcattaacccaaatactga 15205

                                                                         
Query: 165   attcgttatcgaaggacgcagattattgatacctctgtaaagaactttacagtaattatt 224
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15206 attcgttatcgaaggacgcagattattgatacctctgtaaagaactttacagtaattatt 15265

                                                                         
Query: 225   aagtatatcacggataataacggatccgtattgcacaacactggtattcgaattcaaaat 284
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15266 aagtatatcacggataataacggatccgtattgcacaacactggtattcgaattcaaaat 15325

                                                                         
Query: 285   ggcaattagttttttgagctttatagtagtttcagcaaacttagcatgttcattcacctg 344
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15326 ggcaattagttttttgagctttatagtagtttcagcaaacttagcatgttcattcacctg 15385

                                                                         
Query: 345   tgcataatatgaccaaccttgtgtgcattgcacagcaagtcccttttgggaaaaactcag 404
             ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 15386 tgcataatatgaccaaccttgtgtgcattgcacagcaagtccctttt-ggaaaaactcag 15444

                                                                         
Query: 405   ctacagggccggtaattatttggaaacatcaacattgagtaaatcaataccngtgataag 464
             |||||||| ||||||||| ||||||||||||||||||||||||||||||||  |||||||
Sbjct: 15445 ctacaggg-cggtaatta-ttggaaacatcaacattgagtaaatcaataccgttgataag 15502

                                                                         
Query: 465   aatctgcaggtcatcaaattaaccactgctcacattactaacacttggaaagtttctggt 524
             ||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||| |
Sbjct: 15503 aatctgcaggtcatcaaataaaccactgctcacattactaacacttgg-aaggttctgtt 15561

                    
Query: 525   tccattt 531
             |||||||
Sbjct: 15562 tccattt 15568


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 18,692
Number of Sequences: 1807
Number of extensions: 18692
Number of successful extensions: 340
Number of sequences better than 1.0e-20: 1
length of query: 1011
length of database: 10,358,551
effective HSP length: 16
effective length of query: 995
effective length of database: 10,329,639
effective search space: 10277990805
effective search space used: 10277990805
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)