BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC4ZC09FM1.SCF screened BAC_end
(1037 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig842 597 e-170
>3x_Contig842
Length = 3899
Score = 597 bits (301), Expect = e-170
Identities = 344/357 (96%), Gaps = 1/357 (0%)
Strand = Plus / Plus
Query: 72 agcaaaaataggtttacccgtactagaacatttagtgttgcggaacccggtggtggtaag 131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1801 agcaaaaataggtttacccgtactagaacatttagtgttgcggaacccggtggtggtaag 1860
Query: 132 ggacattcttcgtcttatacttccccttatttcgatactacagtgcctctacggcgtaga 191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1861 ggacattcttcgtcttatacttccccttatttcgatactacagtgcctctacggcgtaga 1920
Query: 192 ggctcttaata-gattcgtatagtgcaagtcaaggtcagagaagattttacatcgaggat 250
|||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1921 ggctctgaagacgattcgtatagtgcaagtcaaggtcagagaagattttacatcgaggat 1980
Query: 251 gtggataagacgctaaaggagttgttagccagggaggataccgatgggaactaccaaatt 310
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1981 gtggataagacgctaaaggagttgttagccagtgaggataccgatgggaactaccaaatt 2040
Query: 311 actatagaggatactggtccaaaagttatcagggttggtactgcaaattcgaacggtcac 370
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct: 2041 actatagaggatactggtccaaaagttatcagggttggtactgtaaattcgaacggttac 2100
Query: 371 aagcatgtccatattagggggacctatatgcctcccaaccttccgcaagagttgact 427
|||||||| ||||||||||| |||||||||| | | |||||| |||||||||||||
Sbjct: 2101 aagcatgtgcatattaggggtacctatatgctttcaaaccttttgcaagagttgact 2157
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4155
Number of Sequences: 1807
Number of extensions: 4155
Number of successful extensions: 24
Number of sequences better than 1.0e-20: 1
length of query: 1037
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1021
effective length of database: 10,329,639
effective search space: 10546561419
effective search space used: 10546561419
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)