BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC4ZC09RM1.SCF screened BAC_end
(907 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1650 1067 0.0
>3x_Contig1650
Length = 11257
Score = 1067 bits (538), Expect = 0.0
Identities = 614/634 (96%), Gaps = 4/634 (0%)
Strand = Plus / Minus
Query: 26 gcttacatggtaattataatgtggaactgttgaagaagaaggacgcaagaacgaaaaaat 85
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7096 gcttagatggtaattataatgtggaactgttgaagaagaaggacgcaagaacgaaaaaat 7037
Query: 86 ttgaaagaatgaaagccgttaccaatcaacctgtattaccaacaattcagagtactgaac 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7036 ttgaaagaatgaaagccgttaccaatcaacctgtattaccaacaattcagagtactgaac 6977
Query: 146 taacaccattaacgctaacaatggcaaacgataacagattgttgaataaaactctacagg 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6976 taacaccattaacgctaacaatggcaaacgataacagattgttgaataaaactctacagg 6917
Query: 206 aagaagaaacttctgctaacagtggtcgaccaacctcgaacagaacaagctcaaagaatt 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6916 aagaagaaacttctgctaacagtggtcgaccaacctcgaacagaacaagctcaaagaatt 6857
Query: 266 tattcagtatcaacaagcagcataacacatcttcctctacctctggcttttttaaactca 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6856 tattcagtatcaacaagcagcataacacatcttcctctacctctggcttttttaaactca 6797
Query: 326 aaaattcctcaaaatcttctctcaacaatggccagaaatctcctaaacttgggagtttat 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6796 aaaattcctcaaaatcttctctcaacaatggccagaaatctcctaaacttgggagtttat 6737
Query: 386 ccaaaccatcaaataacgtttctggaaataacagttacaaagatctctttgctggttcct 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6736 ccaaaccatcaaataacgtttctggaaataacagttacaaagatctctttgctggttcct 6677
Query: 446 actataaatataaggtatggagaagacaacaaatgtcattcatcaataaacacgagagga 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6676 actataaatataaggtatggagaagacaacaaatgtcattcatcaataaacacgagagga 6617
Query: 506 tgttgggcattgatggtgactacgtttatttaagtgggcctgatggtgatttcaattgaa 565
|||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct: 6616 tgttggtcattgatggtgactacgtttatataagtgggcctgatggtgatttcaattgga 6557
Query: 566 cacacg-aaacctcaagacgaaaatcgtt-catttaagccaaaattacctggggaaaaag 623
|||||| |||| |||||||| |||||||| ||| ||||||||| | ||||| ||||| |
Sbjct: 6556 cacacgaaaacgtcaagacg-aaatcgttccatataagccaaattaccctggtgaaaagg 6498
Query: 624 tcttaaccgcgttccaaaaaattttaagaatttt 657
|| ||| ||||||||| || |||| |||| ||||
Sbjct: 6497 tc-taagcgcgttccagaatatttcaagattttt 6465
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,226
Number of Sequences: 1807
Number of extensions: 11226
Number of successful extensions: 58
Number of sequences better than 1.0e-20: 1
length of query: 907
length of database: 10,358,551
effective HSP length: 16
effective length of query: 891
effective length of database: 10,329,639
effective search space: 9203708349
effective search space used: 9203708349
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)