BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC4ZC10FM1.SCF screened BAC_end
         (897 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1205                                                        1191   0.0  

>3x_Contig1205 
          Length = 5507

 Score = 1191 bits (601), Expect = 0.0
 Identities = 667/684 (97%), Gaps = 4/684 (0%)
 Strand = Plus / Plus

                                                                        
Query: 86   tgactggagtctgttcacgaaccattcaacatgcagattcccaagtgaatcgattagaga 145
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3565 tgactggagtctgttcacgaaccattcaacatgcagattcccaagtgaatcgattagaga 3624

                                                                        
Query: 146  ttacgtccgataagaaatatttggctgctgctggtcatttacacgtccgtctttatgata 205
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3625 ttacgtccgataagaaatatttggctgctgctggtcatttacacgtccgtctttatgata 3684

                                                                        
Query: 206  tacggtcgaataatccaaatccggtgtcctctttcgaaggccataaagggaacgtaacgt 265
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3685 tacggtcgaataatccaaatccggtgtcctctttcgaaggccataaagggaacgtaacgt 3744

                                                                        
Query: 266  cgattgcatttcaacaggaaaatcgatggatggtatcgtctagtgaagatgggactatta 325
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3745 cgattgcatttcaacaggaaaatcgatggatggtatcgtctagtgaagatgggactatta 3804

                                                                        
Query: 326  aggtttgggatgtacggtccccatctgtgcaaaggaattacaagcataatgcacctgtca 385
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3805 aggtttgggatgtacggtccccatctgtgcaaaggaattacaagcataatgcacctgtca 3864

                                                                        
Query: 386  atgaagtagcgatacatccgaaccaaggggaattgatttcctgcgatcaggatgggaata 445
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3865 atgaagtagcgatacatccgaaccaaggggaattgatttcctgcgatcaggatgggaata 3924

                                                                        
Query: 446  tcaggatttgggatcttggtgaaaaccagtgcacaaaccagctgacaccagaagataaca 505
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3925 tcaggatttgggatcttggtgaaaaccagtgcacaaaccagctgacaccagaagataaca 3984

                                                                        
Query: 506  cgccattacagtcgttgtccgttgcaagcgacggatcgatgcttgttgcaggaaataaca 565
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3985 cgccattacagtcgttgtccgttgcaagcgacggatcgatgcttgttgcaggaaataaca 4044

                                                                        
Query: 566  nagggaactgttatgtatggaagatgcctcatcacacggatgctttcactttgggagccc 625
             |||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct: 4045 aagggaactgttatgtatggaagatgcctcatcacacggatgcttccacttt-ggagccc 4103

                                                                        
Query: 626  gtaacttaattcaaatcgcatacttaatatattaccagggtcccactattggcggattgt 685
            |||||| ||||||||||||||||| |||||||||||||||||| ||||| |||||| |||
Sbjct: 4104 gtaactaaattcaaatcgcatactaaatatattaccagggtcctactatcggcgga-tgt 4162

                                                                        
Query: 686  aaaacatttagccacatggttcagcaaaccttacagctagagttttgaatttagagggat 745
            |||||||||||| |||| |||||||| ||| |||||||||||| | |||| |||| ||||
Sbjct: 4163 aaaacatttagcaacat-gttcagcagaccatacagctagagtatggaatataga-ggat 4220

                                    
Query: 746  atttttgaacttgaaaccacttta 769
            | ||||||||||||||||||||||
Sbjct: 4221 aattttgaacttgaaaccacttta 4244


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4904
Number of Sequences: 1807
Number of extensions: 4904
Number of successful extensions: 31
Number of sequences better than 1.0e-20: 1
length of query: 897
length of database: 10,358,551
effective HSP length: 16
effective length of query: 881
effective length of database: 10,329,639
effective search space: 9100411959
effective search space used: 9100411959
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)