BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC4ZC10RM1.SCF screened BAC_end
(880 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1753 1608 0.0
>3x_Contig1753
Length = 23959
Score = 1608 bits (811), Expect = 0.0
Identities = 824/827 (99%), Gaps = 1/827 (0%)
Strand = Plus / Minus
Query: 45 cttgttgttctgcgatctttgttaatagtttcagctgaaagcggaaaatgggaagatttt 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23558 cttgttgttctgcgatctttgttaatagtttcagctgaaagcggaaaatgggaagatttt 23499
Query: 105 gatattttatttaccaggtataaagacaaactctccttctttcaaaatcaacctagtgcg 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23498 gatattttatttaccaggtataaagacaaactctccttctttcaaaatcaacctagtgcg 23439
Query: 165 gtagttcccaacaatcaattgaaagcagcatttgtgggtctctttgagtacaaattcaaa 224
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 23438 gtagttcccaacaatcaattgaaagcagcatttgtgggtctctttgagtacaaaatcaaa 23379
Query: 225 agaatgagacaattaaatgagattaatcgtcttccatctttaattgaggaattggaaaat 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23378 agaatgagacaattaaatgagattaatcgtcttccatctttaattgaggaattggaaaat 23319
Query: 285 aaaggttacattctaagtaacaatgagtggaatgaagccttatggagaatgatcagaaga 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23318 aaaggttacattctaagtaacaatgagtggaatgaagccttatggagaatgatcagaaga 23259
Query: 345 aagtcgacatttgattttgctatgaaaagaatcaacggtatgttcattcatggctatacc 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23258 aagtcgacatttgattttgctatgaaaagaatcaacggtatgttcattcatggctatacc 23199
Query: 405 tggattcacagagctaggtctttgaggaaacgccaggacggaaaatataacgttaatggt 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23198 tggattcacagagctaggtctttgaggaaacgccaggacggaaaatataacgttaatggt 23139
Query: 465 tcatctagttcttccagtgaacagagcaagacaaatttatacctaaaaagcgaaatctat 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23138 tcatctagttcttccagtgaacagagcaagacaaatttatacctaaaaagcgaaatctat 23079
Query: 525 gatttaatcatgattcagattgataaatatttgagatacaattccaaaacccttgagcgt 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23078 gatttaatcatgattcagattgataaatatttgagatacaattccaaaacccttgagcgt 23019
Query: 585 gaagtcaagcgcttgcttattgaatatccctatgttatgaaacaatatttgcgtaagcca 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23018 gaagtcaagcgcttgcttattgaatatccctatgttatgaaacaatatttgcgtaagcca 22959
Query: 645 agaaacgatataagcaactgggacatcatcgaacaaaatcattcggcgtacttacgcaaa 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22958 agaaacgatataagcaactgggacatcatcgaacaaaatcattcggcgtacttacgcaaa 22899
Query: 705 ctcagaagtacctatgaactagtgccattggacgagttctgaaattcgacttgaggtata 764
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22898 ctcagaagtacctatgaactagtgccattggacgagttctgaaattcgacttgaggtata 22839
Query: 765 ttagtacgaattgactaaagtataatgatgtccaaatttccatgaagccccaaaaaaa-c 823
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct: 22838 ttagtacgaattgactaaagtataatgatgtccaaatttccatgaagcccaaaaaaaacc 22779
Query: 824 tcatagatgtgtgcaaacacatcatctgcatacttagcgaacacatg 870
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22778 tcatagatgtgtgcaaacacatcatctgcatacttagcgaacacatg 22732
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7225
Number of Sequences: 1807
Number of extensions: 7225
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 880
length of database: 10,358,551
effective HSP length: 16
effective length of query: 864
effective length of database: 10,329,639
effective search space: 8924808096
effective search space used: 8924808096
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)