BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC4ZC11FM1.SCF screened BAC_end
(951 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1579 868 0.0
>3x_Contig1579
Length = 11264
Score = 868 bits (438), Expect = 0.0
Identities = 513/533 (96%), Gaps = 5/533 (0%)
Strand = Plus / Minus
Query: 88 atctaccatcccaggtaccagttaaattagctcacctgttttgcctgtgaacaatctcgt 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1690 atctaccatcccaggtaccagttaaattagctcacctgttttgcctgtgaacaatctcgt 1631
Query: 148 gaatgtgcgttgatgttcaatctttatagccttgatatgaaaaaatagcaatctgaaact 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1630 gaatgtgcgttgatgttcaatctttatagccttgatatgaaaaaatagcaatctgaaact 1571
Query: 208 tcaaatgctgaacttactttaacaattaccgtgtaccaaagaaataagaactacgaacgt 267
|||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1570 tcaaatgc-gaatctacgttaacaattaccgtgtaccaaagaaataagaactacgaacgt 1512
Query: 268 cgtactggcaactacatatagcaagctacatttcataccaaacttttctaagaggacata 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1511 cgtactggcaactacatatagcaagctacatttcataccaaacttttctaagaggacata 1452
Query: 328 ggactttatcatttaatcatttcccgtggagcattcgttcacactagaaatatagaactg 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1451 ggactttatcatttaatcatttcccgtggagcattcgttcacactagaaatatagaactg 1392
Query: 388 aacacatattgaatgaggctttgaacttagatcaaagacggtgagatttactaataacat 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1391 aacacatattgaatgaggctttgaacttagatcaaagacggtgagatttactaataacat 1332
Query: 448 cagaagacataactatcataatgtcagaatatgaggttgaccaagaggacgatatggttg 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1331 cagaagacataactatcataatgtcagaatatgaggttgaccaagaggacgatatggttg 1272
Query: 508 gggacatatcgattaaaaaattac-cctttgaccaatcaaatccgtttcattttggttta 566
|| ||||||||| ||||| ||||| | | |||| ||||||||||||| ||||||||||
Sbjct: 1271 ggtacatatcga-taaaagattacgcatatgacgaatcaaatccgttacattttggtt-- 1215
Query: 567 tttttgaagaatatgatgaagatcataacaacctttgattgactggtaacaga 619
|||||||||| ||||||||||||| ||||||||| |||||| ||| ||||||
Sbjct: 1214 attttgaagaagatgatgaagatcagaacaaccttcgattgagtgggaacaga 1162
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8275
Number of Sequences: 1807
Number of extensions: 8275
Number of successful extensions: 94
Number of sequences better than 1.0e-20: 1
length of query: 951
length of database: 10,358,551
effective HSP length: 16
effective length of query: 935
effective length of database: 10,329,639
effective search space: 9658212465
effective search space used: 9658212465
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)