BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC4ZC11RM1.SCF screened BAC_end
(1209 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1386 595 e-170
>3x_Contig1386
Length = 5452
Score = 595 bits (300), Expect = e-170
Identities = 317/323 (98%)
Strand = Plus / Plus
Query: 73 cttgaatttcagcattagtttcatccttcttagccaaggattcattcaatgcagatgtct 132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 cttgaatttcagcattagtttcatccttcttagccaaggattcattcaatgcagatgtct 857
Query: 133 tattatccaattctgctgtcaactcttcgaccttcgattcgtgttcctggttttccttgg 192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 858 tattatccaattctgctgtcaactcttcgaccttcgattcgtgttcctggttttccttgg 917
Query: 193 caacttcatctttcaacaacaacaattcatcaatttcagattggacagtttgttgatcaa 252
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct: 918 caacttcatctttcaacaacaacaattcatcaatttcagattggacagtttggtgagcaa 977
Query: 253 cttctttgtcctctttatctgagatggtttggttcttgatttcttcagtttgcttgtaca 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 978 cttctttgtcctctttatctgagatggtttggttcttgatttcttcagtttgcttgtaca 1037
Query: 313 gatcacccttggcgttaatgtgcttgacgttagtttctagtaatgctcgagatctctcaa 372
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 1038 gatcacccttggcgttaatgtgcttgacgttagtttctagtaatgcttgagatttctcaa 1097
Query: 373 ctngcttcaactccaacttttcc 395
|| ||||||||| ||||||||||
Sbjct: 1098 cttgcttcaacttcaacttttcc 1120
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6803
Number of Sequences: 1807
Number of extensions: 6803
Number of successful extensions: 65
Number of sequences better than 1.0e-20: 1
length of query: 1209
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1193
effective length of database: 10,329,639
effective search space: 12323259327
effective search space used: 12323259327
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)