BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC4ZD01FM1.SCF screened BAC_end
(901 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1423 1205 0.0
>3x_Contig1423
Length = 8454
Score = 1205 bits (608), Expect = 0.0
Identities = 654/664 (98%), Gaps = 4/664 (0%)
Strand = Plus / Plus
Query: 86 tgactccttccccaatggatgtctacgccgactacgccactgcttccaagaagaagttgt 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5511 tgactccttccccaatggatgtctacgccgactacgccactgcttccaagaagaagttgt 5570
Query: 146 aaatgtcatctttaaaatattataactgtgctgtatagatatttttttatagctgtcagt 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5571 aaatgtcatctttaaaatattataactgtgctgtatagatatttttttatagctgtcagt 5630
Query: 206 atgttttctcttatacaataatatattgttgacattttaccaattgttcctcttctcttc 265
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5631 atgttttctctgaaacaataatatattgttgacattttaccaattgttcctcttctcttc 5690
Query: 266 acaagctacatatcatatatattcacactcattataattgaccttaaccctttaggatcg 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5691 acaagctacatatcatatatattcacactcattataattgaccttaaccctttaggatcg 5750
Query: 326 atcataataaatgatcaatatacgtgacaaactaactaaggg-aaactatatgactgtcc 384
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 5751 atcataataaatgatcaatatacgtgacaaactaactaaggggaaactatatgactgtcc 5810
Query: 385 tatacacttcgtagcaagaaaaaccagagaaaaagacatatggtaaaaaaaagagatagt 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5811 tatacacttcgtagcaagaaaaaccagagaaaaagacatatggtaaaaaaaagagatagt 5870
Query: 445 gataaaatcaaggtaaaagggatttctcttatatgaccattagagtacaggtcaagatac 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5871 gataaaatcaaggtaaaagggatttctcttatatgaccattagagtacaggtcaagatac 5930
Query: 505 gccaatcatattaataggcttctggaatttaaacactgccagtctcttttttacagtagt 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5931 gccaatcatattaataggcttctggaatttaaacactgccagtctcttttttacagtagt 5990
Query: 565 ctttcttccggttgaccttttttttttattactttacagtatttttttaccttttaagac 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5991 ctttcttccggttgaccttttttttttattactttacagtatttttttaccttttaagac 6050
Query: 625 tttttttttttttaattattaatagatattacactataataataattcaaataaaacagt 684
|||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 6051 tttttttttttttaataattaatagatataacactataataataattcaaataaaacagt 6110
Query: 685 taaggatatcaccattaaatagagcgggattagatttggaatgtttaactcattatcata 744
||||||||||||||||||||||||| ||| |||| |||||||| ||||||||| ||||||
Sbjct: 6111 taaggatatcaccattaaatagagc-ggagtaga-ttggaatg-ttaactcatcatcata 6167
Query: 745 gcat 748
||||
Sbjct: 6168 gcat 6171
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 16,577
Number of Sequences: 1807
Number of extensions: 16577
Number of successful extensions: 198
Number of sequences better than 1.0e-20: 1
length of query: 901
length of database: 10,358,551
effective HSP length: 16
effective length of query: 885
effective length of database: 10,329,639
effective search space: 9141730515
effective search space used: 9141730515
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)