BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC4ZD02FM1.SCF screened BAC_end
(939 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1797 1207 0.0
>3x_Contig1797
Length = 34782
Score = 1207 bits (609), Expect = 0.0
Identities = 646/657 (98%), Gaps = 1/657 (0%)
Strand = Plus / Minus
Query: 84 aaagagcgacaatgaaaccgattcgcagtatactattcctaccatcaagtcagcaaatga 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6927 aaagagcgacaatgaaaccgattcgcagtatactattcctaccatcaagtcagcaaatga 6868
Query: 144 atgtgccgacgaagacccacacacgttaatactagaacaaaaaccaaatattgatgaacc 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6867 atgtgccgacgaagacccacacacgttaatactagaacaaaaaccaaatattgatgaacc 6808
Query: 204 tctcacgccaacttttttattaatgcaggaaactgtttcattagaaatccagaagaatac 263
|||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6807 tctcacgccaacagtttcattaatgcaggaaactgtttcattagaaatccagaagaatac 6748
Query: 264 gccagtactacaaagattggattctaacgtaaagggtggacaagatattgatacaagcaa 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6747 gccagtactacaaagattggattctaacgtaaagggtggacaagatattgatacaagcaa 6688
Query: 324 atcaaaacgaagaagaagcctgctcaatttttggaggaagccaaagcagtctacggagaa 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6687 atcaaaacgaagaagaagcctgctcaatttttggaggaagccaaagcagtctacggagaa 6628
Query: 384 acaaatgtcaacatcgaagagttttagtttggcgtcaaaaaaaggccaatctaatgaaga 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6627 acaaatgtcaacatcgaagagttttagtttggcgtcaaaaaaaggccaatctaatgaaga 6568
Query: 444 cttgaaagggcctggcactaagaggtcacttagtagcagcagtatcttcaccacctttag 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6567 cttgaaagggcctggcactaagaggtcacttagtagcagcagtatcttcaccacctttag 6508
Query: 504 gaagaataagaacaatgacagcaatgctgttaaaaagagtgataatgtggtcgtggaacg 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6507 gaagaataagaacaatgacagcaatgctgttaaaaagagtgataatgtggtcgtggaacg 6448
Query: 564 acatacagaatcccagatccttccaaagaacaatacacgaccacagaaggtcttccaaaa 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6447 acatacagaatcccagatccttccaaagaacaatacacgaccacagaaggtcttccaaaa 6388
Query: 624 gcgtaagccaacgcccctaaattttgtgaaagatgtgncctgaattaactacagaggata 683
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 6387 gcgtaagccaacgcccctaaattttgtgaaagatgtg-cctgaattaactacagaggata 6329
Query: 684 aattcccaagagatggtttttcaaagtcactccaagtattagagtttgagttaattg 740
||||||||||||||| |||| ||||||||||| | |||| |||| |||||| |||||
Sbjct: 6328 aattcccaagagatgtttttccaaagtcactcgacgtatcagaggttgagtcaattg 6272
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8211
Number of Sequences: 1807
Number of extensions: 8211
Number of successful extensions: 59
Number of sequences better than 1.0e-20: 1
length of query: 939
length of database: 10,358,551
effective HSP length: 16
effective length of query: 923
effective length of database: 10,329,639
effective search space: 9534256797
effective search space used: 9534256797
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)