BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC4ZD02RM1.SCF screened BAC_end
(912 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1755 1515 0.0
>3x_Contig1755
Length = 22936
Score = 1515 bits (764), Expect = 0.0
Identities = 825/836 (98%), Gaps = 7/836 (0%)
Strand = Plus / Plus
Query: 49 cgtcagcagccttgaattcttcagcttggttgaccatttgttcaatttcttcagaagaca 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15427 cgtcagcagccttgaattcttcagcttggttgaccatttgttcaatttcttcagaagaca 15486
Query: 109 atctaccgatagcgttggagatggtaatgttagcggacttacctgtggacttttcgacgg 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15487 atctaccgatagcgttggagatggtaatgttagcggacttacctgtggacttttcgacgg 15546
Query: 169 cagtgacctttaagataccgttggcgtcaacttcgaagatagcttccaaaactggttcac 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15547 cagtgacctttaagataccgttggcgtcaacttcgaagatagcttccaaaactggttcac 15606
Query: 229 cagctggcattggtgggacacccttcaagtcgaattcacccaacaaagtgttttccttac 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15607 cagctggcattggtgggacacccttcaagtcgaattcacccaacaaagtgttttccttac 15666
Query: 289 agttaacacgttcaccttggtaaactgggaaagtaacggtagtttggtggtcagcaacgg 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15667 agttaacacgttcaccttggtaaactgggaaagtaacggtagtttggtggtcagcaacgg 15726
Query: 349 tggtgaaagttcttctcttgatggttgggacagtggtgtttcttggaacgacaacaccga 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15727 tggtgaaagttcttctcttgatggttgggacagtggtgtttcttggaacgacaacaccga 15786
Query: 409 agacatcaccagccataccgacacccaaagacaatggggcaacatccaacaacaacaagt 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15787 agacatcaccagccataccgacacccaaagacaatggggcaacatccaacaacaacaagt 15846
Query: 469 ccttggtttcgtcagaggtggattgaccagtcaagatagcaccttggacggcagcaccgt 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15847 ccttggtttcgtcagaggtggattgaccagtcaagatagcaccttggacggcagcaccgt 15906
Query: 529 aagcaacagcttcatctgggttgatagatttttccaattgcttaccttcgaagaagtcag 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15907 aagcaacagcttcatctgggttgatagatttttccaattgcttaccttcgaagaagtcag 15966
Query: 589 acaacaacttttggacctttggaattctggtagaaccaccaaccaagacgacttcgtcga 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15967 acaacaacttttggacctttggaattctggtagaaccaccaaccaagacgacttcgtcga 16026
Query: 649 tttgggacttggcgatcttagcatcctttagaacttgttcaactggttccaaagtagact 708
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16027 tttgggacttggcgatcttagcatcctttagaacttgttcaactggttccaaagtagac- 16085
Query: 709 ttgaatagagcagcgtttgatgtctttcgaatctagctctggttgatggtagctttaaag 768
||||||||||||||| |||||||| ||||||||||||||||| |||||||||||| |||
Sbjct: 16086 ttgaatagagcagcg-ttgatgtc-ttcgaatctagctctgg-tgatggtagcttcaaa- 16141
Query: 769 gtcttcaccatcgaacaaagagtcaacttcaaccgtgggtttgagcgacagaagacaaag 828
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 16142 gtcttcaccatcgaacaaagagtcaacttcaacggt-ggtttgagcgacagaagacaaag 16200
Query: 829 ttctctttgctctttcagcagcagttctttattcttctcaaagctctggcatcacc 884
||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct: 16201 ttctcttggctctttcagcagcagttc-ttaatcttctcaaagctctggcatcacc 16255
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7375
Number of Sequences: 1807
Number of extensions: 7375
Number of successful extensions: 76
Number of sequences better than 1.0e-20: 1
length of query: 912
length of database: 10,358,551
effective HSP length: 16
effective length of query: 896
effective length of database: 10,329,639
effective search space: 9255356544
effective search space used: 9255356544
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)