BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC4ZD03RM1.SCF screened BAC_end
(1090 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1717 726 0.0
>3x_Contig1717
Length = 18389
Score = 726 bits (366), Expect = 0.0
Identities = 424/444 (95%), Gaps = 3/444 (0%)
Strand = Plus / Plus
Query: 77 ctttctttgngttgatgtggttctgtgcatttgncgngcttgctgataattncagccatt 136
||||||||| ||||||||||||||||||||||| || |||||||||||||| ||||||||
Sbjct: 9703 ctttctttgtgttgatgtggttctgtgcatttgtcgtgcttgctgataatttcagccatt 9762
Query: 137 cctgcaattatggctcatttttctggactagtagttcatcggacgatcggnccgntagtt 196
||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||
Sbjct: 9763 cctgcaattatggctcatttttctggactagtagttcatcggacgattggtccgttagtt 9822
Query: 197 gnaaagctggnaaagctgctgctgcttttgccgcgtttgcctggttattcttcgcggtct 256
| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 9823 gtaaagctggtaaagctgctgctgcttttgccgcgtttgcctggttattcttcgtggtct 9882
Query: 257 ctttcattatctacatttttaacgtcttgcgtccagtcttgtctcattacggctcctccg 316
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 9883 ctttcattatctacatttttaacgtcttgcgtccagtcttgtctcattacggttcctccg 9942
Query: 317 gctggttgaagacgaacgctgcggaattgaacccatggactttcttatctggcaccttca 376
||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct: 9943 gctggttgaagacgaacgctgtggaattgaacccatggactttcttatctggtaccttca 10002
Query: 377 tcttcaacaactttgntgcccaagaggactttaaacatgaagaaggtctcccagaaactg 436
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10003 tcttcaacaactttgttgcccaagaggactttaaacatgaagaaggtctcccagaaactg 10062
Query: 437 ctacaaacagcacctatgatcctcaaaatcaagttcctccaattacagtttaaaaagtac 496
||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| ||
Sbjct: 10063 ctacaaacagcacctatgagcctcaaaatcaagttcctccaactacagtttaaaaag-ac 10121
Query: 497 atgaatgtttcttggaaccgaatt 520
||||||| || ||||||||||||
Sbjct: 10122 atgaatg--tcctggaaccgaatt 10143
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,897
Number of Sequences: 1807
Number of extensions: 11897
Number of successful extensions: 118
Number of sequences better than 1.0e-20: 1
length of query: 1090
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1074
effective length of database: 10,329,639
effective search space: 11094032286
effective search space used: 11094032286
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)