BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC4ZD04FM1.SCF screened BAC_end
(926 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1075 1164 0.0
>3x_Contig1075
Length = 3835
Score = 1164 bits (587), Expect = 0.0
Identities = 642/651 (98%), Gaps = 7/651 (1%)
Strand = Plus / Minus
Query: 88 taatgcctaaaaaaaaagtaaaagaaaaaaaaagctgaaaactgaattgaacaaagaaca 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2006 taatgcctaaaaaaaaagtaaaagaaaaaaaaagctgaaaactgaattgaacaaagaaca 1947
Query: 148 aaacagcgaaatagcgatggaaaccttcaataaattttaaacaatacgccaatcctatag 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1946 aaacagcgaaatagcgatggaaaccttcaataaattttaaacaatacgccaatcctatag 1887
Query: 208 ttaccagcaccgctttacagtttggaaagagccacacatatatacaaagaatgtcttcta 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1886 ttaccagcaccgctttacagtttggaaagagccacacatatatacaaagaatgtcttcta 1827
Query: 268 tctcacaaaacgatttatctaacttggatgatggttccaagaaagaaatcatgacctttt 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1826 tctcacaaaacgatttatctaacttggatgatggttccaagaaagaaatcatgacctttt 1767
Query: 328 tagaatccgagaattccaagcaaaaagtacagatgtctattcatcagttcaccaatcttt 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1766 tagaatccgagaattccaagcaaaaagtacagatgtctattcatcagttcaccaatcttt 1707
Query: 388 gtttcaaaaactgtattagcaacgttcaaaatgctgatttgtcttctcaagaagaacaat 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1706 gtttcaaaaactgtattagcaacgttcaaaatgctgatttgtcttctcaagaagaacaat 1647
Query: 448 gcctaaacaactgtgttaacagatttttggacacaaatatcagaattgttaagggtttgc 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1646 gcctaaacaactgtgttaacagatttttggacacaaatatcagaattgttaagggtttgc 1587
Query: 508 aatctattcaataatttcactccgcgatgtgaaaagaaaatgtagcgcctgctaaacctg 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1586 aatctattcaataatttcactccgcgatgtgaaaagaaaatgtagcgcctgctaaacctg 1527
Query: 568 aacctgtaaagctcgttgtgtgacttcacttcttgtacatatatcagtgagccccgcccc 627
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1526 aacctgtaaagctcgttgtgtgactccacttcttgtacatatatcagtgagccccgcccc 1467
Query: 628 tggttcgttttattttcggattgctaaattacaagggttagtatttttcttttatgtgat 687
||||||||||||||||||||||||||| |||| |||||||||||||||| ||||||||||
Sbjct: 1466 tggttcgttttattttcggattgctaagttac-agggttagtatttttc-tttatgtgat 1409
Query: 688 ggaattagataaggtatttatgcaaaataaatttagtaagaagatttacgc 738
||||||||| |||||||||||| ||||||| |||||||| ||||||||||
Sbjct: 1408 -gaattagat-aggtatttatgc-aaataaa-ttagtaag-agatttacgc 1363
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,140
Number of Sequences: 1807
Number of extensions: 10140
Number of successful extensions: 116
Number of sequences better than 1.0e-20: 1
length of query: 926
length of database: 10,358,551
effective HSP length: 16
effective length of query: 910
effective length of database: 10,329,639
effective search space: 9399971490
effective search space used: 9399971490
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)