BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC4ZD04RM1.SCF screened BAC_end
(888 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1777 1425 0.0
>3x_Contig1777
Length = 26319
Score = 1425 bits (719), Expect = 0.0
Identities = 793/807 (98%), Gaps = 8/807 (0%)
Strand = Plus / Minus
Query: 48 gtcagagcaagaactttcaagtttgattcatagacatggaggaagaccgactggttctta 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11027 gtcagagcaagaactttcaagtttgattcatagacatggaggaagaccgactggttctta 10968
Query: 108 taaattcatgccacttgatgatttcccatatagtcccgaattggaactcgatgaagattt 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10967 taaattcatgccacttgatgatttcccatatagtcccgaattggaactcgatgaagattt 10908
Query: 168 tgttgattataacaaccgtttaggcgatgaacttaaaagtctctccgaaattaagatccc 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10907 tgttgattataacaaccgtttaggcgatgaacttaaaagtctctccgaaattaagatccc 10848
Query: 228 aagatttttatctgccgctccacctcatgctttattcatggattgtactcatgataacga 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10847 aagatttttatctgccgctccacctcatgctttattcatggattgtactcatgataacga 10788
Query: 288 aactccttatcaaaaaagaactgtagaagatactctaccaaatgccgctctcgttggatt 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10787 aactccttatcaaaaaagaactgtagaagatactctaccaaatgccgctctcgttggatt 10728
Query: 348 gagttcttccgctgtcgggtctgtttatggttatgatgagatatatcctcatttattaga 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10727 gagttcttccgctgtcgggtctgtttatggttatgatgagatatatcctcatttattaga 10668
Query: 408 tgttgtcaaagagaaacgtcaatattcagtggttaaagatgatggtatatccattgtgaa 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10667 tgttgtcaaagagaaacgtcaatattcagtggttaaagatgatggtatatccattgtgaa 10608
Query: 468 aaagaaatttaatgcaattcgagcaaccatagcaacgcagagtgatgatgcagaagattc 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10607 aaagaaatttaatgcaattcgagcaaccatagcaacgcagagtgatgatgcagaagattc 10548
Query: 528 cgaaatgcatgttcaccatgatggtcagtttatcacgtaccacagaactcatgctagact 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10547 cgaaatgcatgttcaccatgatggtcagtttatcacgtaccacagaactcatgctagact 10488
Query: 588 cggtgatggctactacttaattgcgagaacaaaattcagtgagaatgattatgatcaaag 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10487 cggtgatggctactacttaattgcgagaacaaaattcagtgagaatgattatgatcaaag 10428
Query: 648 gttacctaccgtcactctatcggggtccactgcagaacttcttttcagttattccctagt 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10427 gttacctaccgtcactctatcggggtccactgcagaacttcttttcagttattccctagt 10368
Query: 708 taaaagatgcgggtctgcctaaagatgatgacaagataattatagggaattcccacaaaa 767
| ||||||| ||||||||||||||||||||||||||||| | | ||||| |||||||||
Sbjct: 10367 t-aaagatggcggtctgcctaaagatgatgacaagataatca-aaggaatccccacaaaa 10310
Query: 768 ttggtggaaattggatggatttggttattcaatataaatgaaagtttaggtgaataccac 827
||||||| |||||||||||||| |||||||||||| |||||||||||||||| |||||||
Sbjct: 10309 ttggtgg-aattggatggattt-gttattcaatat-aatgaaagtttaggtg-ataccac 10254
Query: 828 ggatcagctttaccacacgatttccct 854
||||||| ||||||||||| ||||||
Sbjct: 10253 -gatcagc-ttaccacacgacttccct 10229
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6568
Number of Sequences: 1807
Number of extensions: 6568
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 888
length of database: 10,358,551
effective HSP length: 16
effective length of query: 872
effective length of database: 10,329,639
effective search space: 9007445208
effective search space used: 9007445208
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)