BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC4ZD05FM1.SCF screened BAC_end
(989 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1729 872 0.0
3x_Contig25 125 2e-28
>3x_Contig1729
Length = 15481
Score = 872 bits (440), Expect = 0.0
Identities = 516/532 (96%), Gaps = 7/532 (1%)
Strand = Plus / Plus
Query: 102 ttcctgtagcagttgcggattctcagacattctattcttggatattggcaagaagcgact 161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5475 ttcctgtagcagttgcggattctcagacattctattcttggatattggcaagaagcgact 5534
Query: 162 catggttaacgtgtacagttgtatgacctctgatggcatccgtttaaatattttatttct 221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5535 catggttaacgtgtacagttgtatgacctctgatggcatccgtttaaatattttatttct 5594
Query: 222 tagaggcttctttttcttgtattcctcagtggtaactggcgtggtaggagtaatgggatc 281
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5595 tagaggcttcaataacttgtattcctcagtggtaactggcgtggtaggagtaatgggatc 5654
Query: 282 ggcgtcaagtataacagtgtttagcttaccttgaaataattgacatttaacagtgaattt 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5655 ggcgtcaagtataacagtgtttagcttaccttgaaataattgacatttaacagtgaattt 5714
Query: 342 gaatatgatacttcgatgggtaatattactgttgcctttatctgcacattccattaaacc 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5715 gaatatgatacttcgatgggtaatattactgttgcctttatctgcacattccattaaacc 5774
Query: 402 catcttgattattgattggagtttttcgtttaatgattccacccgatttagatatatcaa 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5775 catcttgattattgattggagtttttcgtttaatgattccacccgatttagatatatcaa 5834
Query: 462 tgcatgaacgtgctcattctctggtattcttttctggaaactacccaaaaaagaatcgta 521
|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct: 5835 tgcatgaacgtgctcattctctggtattctttcctggaaactacccaaaaaggaatcgta 5894
Query: 522 cccatagttgactttgggggttagcccgtaaaatctgttaaaagacagaactagcggttt 581
||||||||||||||| |||||||| |||||||||||| ||||||||||||||||| ||||
Sbjct: 5895 cccatagttgacttt-ggggttag-ccgtaaaatctg-taaaagacagaactagc-gttt 5950
Query: 582 taccttctgttttatttcacggtgacccgcaagtcccaatacctgtgtagta 633
||||| ||| | ||||||||||||| |||||||| |||||| ||||||||||
Sbjct: 5951 tacctcctg-tatatttcacggtga-ccgcaagt-ccaataactgtgtagta 5999
>3x_Contig25
Length = 1081
Score = 125 bits (63), Expect = 2e-28
Identities = 159/191 (83%)
Strand = Plus / Plus
Query: 249 agtggtaactggcgtggtaggagtaatgggatcggcgtcaagtataacagtgtttagctt 308
|||||||| ||| ||||||||||||||||||| || || |||||||| ||||||||| ||
Sbjct: 639 agtggtaagtggggtggtaggagtaatgggatgggggtgaagtataagagtgtttaggtt 698
Query: 309 accttgaaataattgacatttaacagtgaatttgaatatgatacttcgatgggtaatatt 368
| |||| ||| |||| |||||| ||||||||||||||||||| || ||| ||||||||
Sbjct: 699 aggttgagatagttgagatttaagagtgaatttgaatatgatagttgcatgtgtaatatt 758
Query: 369 actgttgcctttatctgcacattccattaaacccatcttgattattgattggagtttttc 428
| ||||| ||||| || | ||| |||||| || |||||||||||||||| |||||
Sbjct: 759 agtgttgggtttatgtggagattggattaaagggatgttgattattgattggactttttg 818
Query: 429 gtttaatgatt 439
||||||||||
Sbjct: 819 ctttaatgatt 829
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8251
Number of Sequences: 1807
Number of extensions: 8251
Number of successful extensions: 65
Number of sequences better than 1.0e-20: 2
length of query: 989
length of database: 10,358,551
effective HSP length: 16
effective length of query: 973
effective length of database: 10,329,639
effective search space: 10050738747
effective search space used: 10050738747
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)