BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC4ZD05RM1.SCF screened BAC_end
(937 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1718 1063 0.0
>3x_Contig1718
Length = 19496
Score = 1063 bits (536), Expect = 0.0
Identities = 627/647 (96%), Gaps = 8/647 (1%)
Strand = Plus / Minus
Query: 46 cttcgctaggctactaacccaaagcgagaat-atacc-ctagacc-cacgccctcgcaat 102
||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||
Sbjct: 4958 cttcgctaggctactaacccaaagcgagaatcataccactagaccacacgccctcgcaat 4899
Query: 103 tttggcagaaaacttttctaggtgtccacagagtctgtgaatgtcatgtgatcggcgaat 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4898 tttggcagaaaacttttctaggtgtccacagagtctgtgaatgtcatgtgatcggcgaat 4839
Query: 163 gaagtcttgaagacctcagttgctaactgatttgcatgttcagctccttcctctagattg 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4838 gaagtcttgaagacctcagttgctaactgatttgcatgttcagctccttcctctagattg 4779
Query: 223 aggcttcatacctcacagtggtgtacgtattttagaaggtcttttatcaaacattgctga 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4778 aggcttcatacctcacagtggtgtacgtattttagaaggtcttttatcaaacattgctga 4719
Query: 283 aagtttatactatcccccaattaattgcccaatggcaattaattcatatattgaagaagt 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4718 aagtttatactatcccccaattaattgcccaatggcaattaattcatatattgaagaagt 4659
Query: 343 atttataacattctgttgttaatgataaatataaagaggctaatgagataaaattagctc 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4658 atttataacattctgttgttaatgataaatataaagaggctaatgagataaaattagctc 4599
Query: 403 agggagtttcactgtcgtagtaaaaagatttccgctggttgcaattaataaaaggtattt 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4598 agggagtttcactgtcgtagtaaaaagatttccgctggttgcaattaataaaaggtattt 4539
Query: 463 ttgcgttgattcaaagggtgaaatccattaataaattatccaaagatgcacattgttagc 522
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4538 ttgcgttgattcaaagggtgaaatccattaataaattatccaaagatgcacattgttag- 4480
Query: 523 cacgtggtttcngctttcgtacataaattaaagggaattcagccacctcaacgaattaaa 582
||||||||||| |||| |||||||||||||||||||||||| || ||||||||||||||
Sbjct: 4479 cacgtggtttcggcttccgtacataaattaaagggaattcaagcaactcaacgaattaaa 4420
Query: 583 tagcttcgcgtggcgtaatgggcaacgcgtctgactttttatcagaagattggggggttg 642
|||| |||||||||||||| ||||||||||||||||| | |||||||||||| ||| | |
Sbjct: 4419 tagc-tcgcgtggcgtaat-ggcaacgcgtctgacttctaatcagaagattgtgggttcg 4362
Query: 643 accccca-cgtgagtgctttattt-aaaatccccgataatttaatgg 687
||||||| |||||||||||||||| ||||||| ||||| ||||||||
Sbjct: 4361 acccccaccgtgagtgctttatttcaaaatccgcgatagtttaatgg 4315
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6705
Number of Sequences: 1807
Number of extensions: 6705
Number of successful extensions: 59
Number of sequences better than 1.0e-20: 1
length of query: 937
length of database: 10,358,551
effective HSP length: 16
effective length of query: 921
effective length of database: 10,329,639
effective search space: 9513597519
effective search space used: 9513597519
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)