BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC4ZD06FM1.SCF screened BAC_end
(1057 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig967 648 0.0
>3x_Contig967
Length = 3110
Score = 648 bits (327), Expect = 0.0
Identities = 358/367 (97%), Gaps = 1/367 (0%)
Strand = Plus / Plus
Query: 132 cttatactgcagaggatgaatccaatttcaataggccatttacaggagttgcaggaggtg 191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2721 cttatactgcagaggatgaatccaatttcaataggccatttacaggagttgcaggaggtg 2780
Query: 192 aaactattcaaattacaacttccatcaaggacagcttcgtaccatcaccggagacttctc 251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2781 aaactattcaaattacaacttccatcaaggacagcttcgtaccatcaccggagacttctc 2840
Query: 252 ataaaataagattttttctcagataatgtaattccattgagcaaagcacaaattatagaa 311
||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 2841 ataaaataagattcgc-cgcagataatgtaattccattgagcaaagcacaaattatagaa 2899
Query: 312 aattctgcatccgaagctgatgaagatgattcaaatgaagaagacggagaggaggaatca 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2900 aattctgcatccgaagctgatgaagatgattcaaatgaagaagacggagaggaggaatca 2959
Query: 372 gattcctcttctagattttcattcgaaaacggtaatgatctgtgtggaagaacagcttct 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2960 gattcctcttctagattttcattcgaaaacggtaatgatctgtgtggaagaacagcttct 3019
Query: 432 ttgaaatattactcaactgaaacaaataccccaccactgatcgtgaatgatatatatgag 491
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 3020 ttgaaatattactcaactgaaacaaataccccaccactgtacttgaatgatatatatgat 3079
Query: 492 aactata 498
|||||||
Sbjct: 3080 aactata 3086
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8849
Number of Sequences: 1807
Number of extensions: 8849
Number of successful extensions: 76
Number of sequences better than 1.0e-20: 1
length of query: 1057
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1041
effective length of database: 10,329,639
effective search space: 10753154199
effective search space used: 10753154199
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)