BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC4ZD06RM1.SCF screened BAC_end
(1001 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1790 833 0.0
3x_Contig1124 833 0.0
3x_Contig1213 817 0.0
3x_Contig1805 809 0.0
3x_Contig1773 809 0.0
>3x_Contig1790
Length = 27369
Score = 833 bits (420), Expect = 0.0
Identities = 439/444 (98%), Gaps = 1/444 (0%)
Strand = Plus / Plus
Query: 78 gcttataaactgaggattctttgtcccctctcccattcgatgttgataacctattcgtta 137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2599 gcttataaactgaggattctttgtcccctctcccattcgatgttgataacctattcgtta 2658
Query: 138 ttgatctacattaacgcaatgtgccaaatagaagaaaccaaagaaaacgtcgaagaagca 197
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2659 ttgatctacattaac-caatgtgccaaatagaagaaaccaaagaaaacgtcgaagaagca 2717
Query: 198 tcgaatcacatggtaaatattattcactaataactctaacctcgaatttaatattctgag 257
||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 2718 tcgaatcacatggtaaatattattcactaataactctaacctcgaatttaatacccggag 2777
Query: 258 ctttccatcattgcctaaacacaaagctgaaatgacaggcatcagattttgttctatcaa 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2778 ctttccatcattgcctaaacacaaagctgaaatgacaggcatcagattttgttctatcaa 2837
Query: 318 cgaatcctttcttaagagagtagaaacattgtcggataactgccaaatgctaaggcccca 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2838 cgaatcctttcttaagagagtagaaacattgtcggataactgccaaatgctaaggcccca 2897
Query: 378 taataccaattacaaaacgcaatgcttttgccacaaaccgattgcccattgcagaatacg 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2898 taataccaattacaaaacgcaatgcttttgccacaaaccgattgcccattgcagaatacg 2957
Query: 438 gcatcctcgacatctcttgttactgccccggcaatgatctgttttaccgcagaattgccc 497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2958 gcatcctcgacatctcttgttactgccccggcaatgatctgttttaccgcagaattgccc 3017
Query: 498 acagttgttgatcgctttttgttt 521
|||||||||||||||| |||||||
Sbjct: 3018 acagttgttgatcgctctttgttt 3041
>3x_Contig1124
Length = 2635
Score = 833 bits (420), Expect = 0.0
Identities = 439/444 (98%), Gaps = 1/444 (0%)
Strand = Plus / Plus
Query: 78 gcttataaactgaggattctttgtcccctctcccattcgatgttgataacctattcgtta 137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 780 gcttataaactgaggattctttgtcccctctcccattcgatgttgataacctattcgtta 839
Query: 138 ttgatctacattaacgcaatgtgccaaatagaagaaaccaaagaaaacgtcgaagaagca 197
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 840 ttgatctacattaac-caatgtgccaaatagaagaaaccaaagaaaacgtcgaagaagca 898
Query: 198 tcgaatcacatggtaaatattattcactaataactctaacctcgaatttaatattctgag 257
||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 899 tcgaatcacatggtaaatattattcactaataactctaacctcgaatttaatacccggag 958
Query: 258 ctttccatcattgcctaaacacaaagctgaaatgacaggcatcagattttgttctatcaa 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 959 ctttccatcattgcctaaacacaaagctgaaatgacaggcatcagattttgttctatcaa 1018
Query: 318 cgaatcctttcttaagagagtagaaacattgtcggataactgccaaatgctaaggcccca 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1019 cgaatcctttcttaagagagtagaaacattgtcggataactgccaaatgctaaggcccca 1078
Query: 378 taataccaattacaaaacgcaatgcttttgccacaaaccgattgcccattgcagaatacg 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1079 taataccaattacaaaacgcaatgcttttgccacaaaccgattgcccattgcagaatacg 1138
Query: 438 gcatcctcgacatctcttgttactgccccggcaatgatctgttttaccgcagaattgccc 497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1139 gcatcctcgacatctcttgttactgccccggcaatgatctgttttaccgcagaattgccc 1198
Query: 498 acagttgttgatcgctttttgttt 521
|||||||||||||||| |||||||
Sbjct: 1199 acagttgttgatcgctctttgttt 1222
>3x_Contig1213
Length = 3226
Score = 817 bits (412), Expect = 0.0
Identities = 437/444 (98%), Gaps = 1/444 (0%)
Strand = Plus / Minus
Query: 78 gcttataaactgaggattctttgtcccctctcccattcgatgttgataacctattcgtta 137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2537 gcttataaactgaggattctttgtcccctctcccattcgatgttgataacctattcgtta 2478
Query: 138 ttgatctacattaacgcaatgtgccaaatagaagaaaccaaagaaaacgtcgaagaagca 197
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2477 ttgatctacattaac-caatgtgccaaatagaagaaaccaaagaaaacgtcgaagaagca 2419
Query: 198 tcgaatcacatggtaaatattattcactaataactctaacctcgaatttaatattctgag 257
||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 2418 tcgaatcacatggtaaatattattcactaataactctaacctcgaatttaatacccggag 2359
Query: 258 ctttccatcattgcctaaacacaaagctgaaatgacaggcatcagattttgttctatcaa 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2358 ctttccatcattgcctaaacacaaagctgaaatgacaggcatcagattttgttctatcaa 2299
Query: 318 cgaatcctttcttaagagagtagaaacattgtcggataactgccaaatgctaaggcccca 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2298 cgaatcctttcttaagagagtagaaacattgtcggataactgccaaatgctaaggcccca 2239
Query: 378 taataccaattacaaaacgcaatgcttttgccacaaaccgattgcccattgcagaatacg 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2238 taataccaattacaaaacgcaatgcttttgccacaaaccgattgcccattgcagaatacg 2179
Query: 438 gcatcctcgacatctcttgttactgccccggcaatgatctgttttaccgcagaattgccc 497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 2178 acatcctcgacatctcttgttactgccccggcaatgatctgttttaccgcagaattgctc 2119
Query: 498 acagttgttgatcgctttttgttt 521
|||||||||||||||| |||||||
Sbjct: 2118 acagttgttgatcgctctttgttt 2095
>3x_Contig1805
Length = 19369
Score = 809 bits (408), Expect = 0.0
Identities = 436/444 (98%), Gaps = 1/444 (0%)
Strand = Plus / Minus
Query: 78 gcttataaactgaggattctttgtcccctctcccattcgatgttgataacctattcgtta 137
||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 19286 gcttataaactgaggatactttgtaccctctcccattcgatgttgataacctatacgtta 19227
Query: 138 ttgatctacattaacgcaatgtgccaaatagaagaaaccaaagaaaacgtcgaagaagca 197
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19226 ttgatctacattaac-caatgtgccaaatagaagaaaccaaagaaaacgtcgaagaagca 19168
Query: 198 tcgaatcacatggtaaatattattcactaataactctaacctcgaatttaatattctgag 257
||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 19167 tcgaatcacatggtaaatattattcactaataactctaacctcgaatttaatacccggag 19108
Query: 258 ctttccatcattgcctaaacacaaagctgaaatgacaggcatcagattttgttctatcaa 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19107 ctttccatcattgcctaaacacaaagctgaaatgacaggcatcagattttgttctatcaa 19048
Query: 318 cgaatcctttcttaagagagtagaaacattgtcggataactgccaaatgctaaggcccca 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19047 cgaatcctttcttaagagagtagaaacattgtcggataactgccaaatgctaaggcccca 18988
Query: 378 taataccaattacaaaacgcaatgcttttgccacaaaccgattgcccattgcagaatacg 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18987 taataccaattacaaaacgcaatgcttttgccacaaaccgattgcccattgcagaatacg 18928
Query: 438 gcatcctcgacatctcttgttactgccccggcaatgatctgttttaccgcagaattgccc 497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18927 gcatcctcgacatctcttgttactgccccggcaatgatctgttttaccgcagaattgccc 18868
Query: 498 acagttgttgatcgctttttgttt 521
|||||||||||||||| |||||||
Sbjct: 18867 acagttgttgatcgctctttgttt 18844
>3x_Contig1773
Length = 8694
Score = 809 bits (408), Expect = 0.0
Identities = 436/444 (98%), Gaps = 1/444 (0%)
Strand = Plus / Plus
Query: 78 gcttataaactgaggattctttgtcccctctcccattcgatgttgataacctattcgtta 137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6163 gcttataaactgaggattctttgtcccctctcccattcgatgttgataacctattcgtta 6222
Query: 138 ttgatctacattaacgcaatgtgccaaatagaagaaaccaaagaaaacgtcgaagaagca 197
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6223 ttgatctacattaac-caatgtgccaaatagaagaaaccaaagaaaacgtcgaagaagca 6281
Query: 198 tcgaatcacatggtaaatattattcactaataactctaacctcgaatttaatattctgag 257
||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 6282 tcgaatcacatggtaaatattattcactaataactctaacctcgaatttaatacccggag 6341
Query: 258 ctttccatcattgcctaaacacaaagctgaaatgacaggcatcagattttgttctatcaa 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6342 ctttccatcattgcctaaacacaaagctgaaatgacaggcatcagattttgttctatcaa 6401
Query: 318 cgaatcctttcttaagagagtagaaacattgtcggataactgccaaatgctaaggcccca 377
|||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct: 6402 cgaatcctttcttaagagagtagaaaaattgtcagataactgccaaatgctaaggcccca 6461
Query: 378 taataccaattacaaaacgcaatgcttttgccacaaaccgattgcccattgcagaatacg 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6462 taataccaattacaaaacgcaatgcttttgccacaaaccgattgcccattgcagaatacg 6521
Query: 438 gcatcctcgacatctcttgttactgccccggcaatgatctgttttaccgcagaattgccc 497
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 6522 gcatcctcgacatctcttgttactgccccggcaatgatctgttttactgcagaattgccc 6581
Query: 498 acagttgttgatcgctttttgttt 521
|||||||||||||||| |||||||
Sbjct: 6582 acagttgttgatcgctctttgttt 6605
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6391
Number of Sequences: 1807
Number of extensions: 6391
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 5
length of query: 1001
length of database: 10,358,551
effective HSP length: 16
effective length of query: 985
effective length of database: 10,329,639
effective search space: 10174694415
effective search space used: 10174694415
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)