BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC4ZD07RM1.SCF screened BAC_end
(894 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1600 1457 0.0
>3x_Contig1600
Length = 9359
Score = 1457 bits (735), Expect = 0.0
Identities = 742/743 (99%), Gaps = 1/743 (0%)
Strand = Plus / Minus
Query: 47 cttcaatcttttttttcttgtcggaagatcttgaaaaaatacccccgatttttttaattt 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5213 cttcaatcttttttttcttgtcggaagatcttgaaaaaatacccccgatttttttaattt 5154
Query: 107 cccgttctctttcacttaaataagcagtgaaattaatgtataaatcctgtatcttttata 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5153 cccgttctctttcacttaaataagcagtgaaattaatgtataaatcctgtatcttttata 5094
Query: 167 ctttttagccgataaaaaacagaaataccaacaaaaaaactaaattagagtaagcagaac 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5093 ctttttagccgataaaaaacagaaataccaacaaaaaaactaaattagagtaagcagaac 5034
Query: 227 tcaaacagtgccagagagtcgagtattgcgtttactagacgagtttaatttaacaggcaa 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5033 tcaaacagtgccagagagtcgagtattgcgtttactagacgagtttaatttaacaggcaa 4974
Query: 287 ataataaactccgttattattttccttctgtctcctatcttaattgtattaaggcaggcc 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4973 ataataaactccgttattattttccttctgtctcctatcttaattgtattaaggcaggcc 4914
Query: 347 tcttgaatcttgaaaataataaatacctcttctataaaaatagtaagaaccagtatttat 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4913 tcttgaatcttgaaaataataaatacctcttctataaaaatagtaagaaccagtatttat 4854
Query: 407 ataggaaatagtagatgcactatatatattcacgattttgtgtgaaaaaaaagcactcat 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4853 ataggaaatagtagatgcactatatatattcacgattttgtgtgaaaaaaaagcactcat 4794
Query: 467 tcaactattaaatggaccaccaatatctctctcgtgccatttccccggttttgatcctca 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4793 tcaactattaaatggaccaccaatatctctctcgtgccatttccccggttttgatcctca 4734
Query: 527 ctcccattttctttctttcttcgaatcggtactgatacctttaatgcctgtagctctcta 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4733 ctcccattttctttctttcttcgaatcggtactgatacctttaatgcctgtagctctcta 4674
Query: 587 gcagctttatgtggtttttgcataaggtttccttgctacatggtggaacaaacaagtgtt 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4673 gcagctttatgtggtttttgcataaggtttccttgctacatggtggaacaaacaagtgtt 4614
Query: 647 ttagtgccgcttactcagttttcaacaatacgagaatgccagatagtaaaagctgtaggg 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4613 ttagtgccgcttactcagttttcaacaatacgagaatgccagatagtaaaagctgtaggg 4554
Query: 707 catggtctgcgagtaggggtccggtgacccgttttcggattcgaagacgggaaactacca 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4553 catggtctgcgagtaggggtccggtgacccgttttcggattcgaagacgggaaactacca 4494
Query: 767 gattcatttttgtgggacagccc 789
|||||| ||||||||||||||||
Sbjct: 4493 gattca-ttttgtgggacagccc 4472
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8220
Number of Sequences: 1807
Number of extensions: 8220
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 894
length of database: 10,358,551
effective HSP length: 16
effective length of query: 878
effective length of database: 10,329,639
effective search space: 9069423042
effective search space used: 9069423042
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)