BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC4ZD08RM1.SCF screened BAC_end
(919 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1776 1441 0.0
>3x_Contig1776
Length = 26138
Score = 1441 bits (727), Expect = 0.0
Identities = 827/850 (97%), Gaps = 9/850 (1%)
Strand = Plus / Minus
Query: 48 aacagaagtaacaagcccatctacgtacatcgaacttgtgcaaccgatacacaatcaatg 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22480 aacagaagtaacaagcccatctacgtacatcgaacttgtgcaaccgatacacaatcaatg 22421
Query: 108 agattcgttctaggtgccgtgacagatttagtaattcaacaaaacctaaaaaagagcggc 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22420 agattcgttctaggtgccgtgacagatttagtaattcaacaaaacctaaaaaagagcggc 22361
Query: 168 atcttataaatcctttaggtgtaatatgtcaggtaacgcgcacacattacatataagttg 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22360 atcttataaatcctttaggtgtaatatgtcaggtaacgcgcacacattacatataagttg 22301
Query: 228 tacatagttaagcgatgaataaggttctagatcttttagagggtaacctcaaatatttgt 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22300 tacatagttaagcgatgaataaggttctagatcttttagagggtaacctcaaatatttgt 22241
Query: 288 cagaccccatcacaaaggccaggttaaaagtgaaaaggcaaaaaaacagggtgtttccgg 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22240 cagaccccatcacaaaggccaggttaaaagtgaaaaggcaaaaaaacagggtgtttccgg 22181
Query: 348 gtaacgaaagatagcaagcaagtctactatttaagaacttcaacaagacacataagtacc 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22180 gtaacgaaagatagcaagcaagtctactatttaagaacttcaacaagacacataagtacc 22121
Query: 408 cttgcttgacgaagttctactgtactgacaatatatagatacttgcaggatataaccgtt 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22120 cttgcttgacgaagttctactgtactgacaatatatagatacttgcaggatataaccgtt 22061
Query: 468 aatcaagagccataaaaaaacatacacacccaacataccattacagagaatgtctatgca 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22060 aatcaagagccataaaaaaacatacacacccaacataccattacagagaatgtctatgca 22001
Query: 528 gacgagtttgtgcaaggaaaagaacatcccattgagccagatcatacggcccattcagcc 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22000 gacgagtttgtgcaaggaaaagaacatcccattgagccagatcatacggcccattcagcc 21941
Query: 588 ggtcctagaccatgcaaagatcgatgcgatgatatctacttttcagggaacaccgaaagc 647
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct: 21940 ggtcctagaccatgcaaagatcgatgcgatgatatctactttcaagggaacaccgaaggc 21881
Query: 648 gtctcgaacaatgaccgagtcacaagctgcagaacgtgttgccacattaccccgccgatc 707
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 21880 gtctcgaacaatgaccgagtcacaagctgcagaacgtgttgccacatta-cccgccgatc 21822
Query: 708 agcgtctaccttcagtggacgttgctgccgtccgttacccggaaacgggagaaacaaggt 767
||||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct: 21821 agcgtctacctccagtggacgtcgctgccgtccgttacccggaaacaggagaaacaaggt 21762
Query: 768 actttgcattcggcgggctgccattgttttcaggcgtacgaaaaatttacccttggaatc 827
|||||||||||||| ||||||||| || | ||||||||||| ||| ||| ||| ||||||
Sbjct: 21761 actttgcattcggc-ggctgccatcgtctccaggcgtacgacaaa-ttagcctcggaatc 21704
Query: 828 ccaggaaaaacgat-tcgcgggtccgttggtcggttaatgcccatggaaccccaaaacaa 886
||||| |||||||| |||| |||||||| ||||||| ||||||||| || |||||||||
Sbjct: 21703 ccagg-aaaacgatatcgc-ggtccgtt-gtcggttgatgcccatg--acaccaaaacaa 21649
Query: 887 ttgaaactat 896
||||||||||
Sbjct: 21648 ttgaaactat 21639
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5086
Number of Sequences: 1807
Number of extensions: 5086
Number of successful extensions: 39
Number of sequences better than 1.0e-20: 1
length of query: 919
length of database: 10,358,551
effective HSP length: 16
effective length of query: 903
effective length of database: 10,329,639
effective search space: 9327664017
effective search space used: 9327664017
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)