BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC4ZD09FM1.SCF screened BAC_end
(1175 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1253 490 e-138
>3x_Contig1253
Length = 5628
Score = 490 bits (247), Expect = e-138
Identities = 309/326 (94%), Gaps = 3/326 (0%)
Strand = Plus / Minus
Query: 132 ctaagacaatnntgaagaaatcacaaccactttactaaccgcaccgtgaaccacacgtta 191
|||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 2784 ctaagacaatt-tgaagaaatcacaaccactttactaaccgcacc-tgaaccacacgtta 2727
Query: 192 aagaagccttactctctaatattctacctatctgccatcttttggggaaagaaaggacaa 251
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 2726 aagaagccttactctctaatattctacctatctgccatctttttggtaaagaaaggacaa 2667
Query: 252 acgatataattctttttctcttgatcacctatttgaatgacaaaaattcgtcattaagaa 311
| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 2666 atgatataattctcagtcacttgatcacctatttgaatgacaaaaattcgtcattaagaa 2607
Query: 312 tcttcacttattagatctattactggagtgtcagcactacttggttcagtagctttggag 371
||| ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct: 2606 tct-cacttattagatctattactggagtttcagtactacttggttcagtagctttggag 2548
Query: 372 caggatatattgtcactcctgactcaaaccttaagcgactctgaggaggcggcggtcatt 431
||| |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 2547 cagtatatattgccactcctgactcaaaccttaagcgactctgaggaggcggtggtcatt 2488
Query: 432 tccgtcattcaaagcttaataagctt 457
|||||||||||||| |||||||||||
Sbjct: 2487 tccgtcattcaaagtttaataagctt 2462
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8612
Number of Sequences: 1807
Number of extensions: 8612
Number of successful extensions: 89
Number of sequences better than 1.0e-20: 1
length of query: 1175
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1159
effective length of database: 10,329,639
effective search space: 11972051601
effective search space used: 11972051601
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)