BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC4ZD09RM1.SCF screened BAC_end
(1192 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1606 615 e-176
>3x_Contig1606
Length = 11468
Score = 615 bits (310), Expect = e-176
Identities = 391/417 (93%), Gaps = 2/417 (0%)
Strand = Plus / Plus
Query: 76 cttatcga-ggctaacgacgcatcaatcctctnggctggactaagncgaaggaataatcg 134
|||||||| ||||||||||||||||||||||| ||| ||||||| ||||||||||||||
Sbjct: 5877 cttatcgatggctaacgacgcatcaatcctctttgcttgactaagtcgaaggaataatcg 5936
Query: 135 acagaaaattgnatcttccctgataatgcgctgcagatgcgccgncctcatactngcaac 194
||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct: 5937 acagaaaattgtatcttccctgataatgcgctgcagatgcgccgtcctcatacttgcaac 5996
Query: 195 tatcaacacgtatatcgctaaccgctagcaacacacctgcccttaaagtacgagtgatcg 254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5997 tatcaacacgtatatcgctaaccgctagcaacacacctgcccttaaagtacgagtgatcg 6056
Query: 255 cagcactgctaagtagtaaaatggtaatgcaaaattaaaagcaaattcatttacatgaac 314
|||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 6057 cagcactgttaagtagtaaaatggtaatgcaaaattaaaagtaaatttatttacatgaac 6116
Query: 315 aaaatagataggggagataaaacatactataacatcaaaatgaaagagaaagtgggcacg 374
||||||||||||| |||||||||||| |||||||| |||||||||||||||||||| |||
Sbjct: 6117 aaaatagatagggtagataaaacataatataacattaaaatgaaagagaaagtgggtacg 6176
Query: 375 atgcgagctcgactctgacaatcaaaagtagaaatccaaccgaggcatacaacacccggg 434
||| ||||| ||||||||||||||||||||||||||||||||||| |||||| || ||||
Sbjct: 6177 atgtgagcttgactctgacaatcaaaagtagaaatccaaccgaggtatacaatacgcggg 6236
Query: 435 gggaaggcctgtcgagctctacttccaaaagccccacacgggaattttcaaacaggc 491
|||||| ||||||||||||||||| |||||||| || |||| || ||||||||||||
Sbjct: 6237 gggaagtcctgtcgagctctactttcaaaagcctcaaacggcaa-tttcaaacaggc 6292
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4643
Number of Sequences: 1807
Number of extensions: 4643
Number of successful extensions: 25
Number of sequences better than 1.0e-20: 1
length of query: 1192
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1176
effective length of database: 10,329,639
effective search space: 12147655464
effective search space used: 12147655464
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)