BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC4ZD10FM1.SCF screened BAC_end
(930 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1801 1053 0.0
>3x_Contig1801
Length = 57606
Score = 1053 bits (531), Expect = 0.0
Identities = 560/567 (98%), Gaps = 2/567 (0%)
Strand = Plus / Minus
Query: 82 actaaactttcagatgtcttcgatgtgagaactttaaaggtgttaacaatcatatcatgg 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27678 actaaactttcagatgtcttcgatgtgagaactttaaaggtgttaacaatcatatcatgg 27619
Query: 142 aatgagaatttgaataaacgagaattggaaattttgactgaattttacgagtttacagaa 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27618 aatgagaatttgaataaacgagaattggaaattttgactgaattttacgagtttacagaa 27559
Query: 202 attcgggatttatctcttatatctatgagacaaaatccagccatactcatcgaacttttc 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27558 attcgggatttatctcttatatctatgagacaaaatccagccatactcatcgaacttttc 27499
Query: 262 aaacgtttgaagaatttgaaaaggttgaagacagattttttgcatgagttcactccacat 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27498 aaacgtttgaagaatttgaaaaggttgaagacagattttttgcatgagttcactccacat 27439
Query: 322 cctgtttcaacggatgtattcctgtccattttattaaattgtagagagctacaattccta 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27438 cctgtttcaacggatgtattcctgtccattttattaaattgtagagagctacaattccta 27379
Query: 382 gatttgagattcgaaaatatcgacaggcagatcatttctatcgaggggtcaaggttcaaa 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27378 gatttgagattcgaaaatatcgacaggcagatcatttctatcgaggggtcaaggttcaaa 27319
Query: 442 ttcttacataactgccattgtgatgattgtaatcatgtgtttcaggatatactatacggt 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27318 ttcttacataactgccattgtgatgattgtaatcatgtgtttcaggatatactatacggt 27259
Query: 502 aaatttttcaattcgtcgaaagatatggtgatcagagatttaagcgatttgatcgcttag 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 27258 aaatttttcaattcgtcgaaagatatggtgatcagagatttaagcgatttgatcgctaag 27199
Query: 562 gatatattcacaatgatgaaatacctcttcttattaccttattcaaaagcatttgacata 621
|||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||
Sbjct: 27198 gatatattcacaatgatgaaatacctctctttattaccttattcaaaagcattttatata 27139
Query: 622 taccccttctgtttaggacacaaccaa 648
|| |||||||| |||||||||||||||
Sbjct: 27138 ta-cccttctg-ttaggacacaaccaa 27114
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8777
Number of Sequences: 1807
Number of extensions: 8777
Number of successful extensions: 63
Number of sequences better than 1.0e-20: 1
length of query: 930
length of database: 10,358,551
effective HSP length: 16
effective length of query: 914
effective length of database: 10,329,639
effective search space: 9441290046
effective search space used: 9441290046
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)