BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC4ZD10RM1.SCF screened BAC_end
(887 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1442 1031 0.0
3x_Contig1233 391 e-108
>3x_Contig1442
Length = 8270
Score = 1031 bits (520), Expect = 0.0
Identities = 583/596 (97%), Gaps = 6/596 (1%)
Strand = Plus / Minus
Query: 253 tattgttgcaggtctaggcggtatctcttccattattagtaacagaccagaacacgtttg 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8270 tattgttgcaggtctaggcggtatctcttccattattagtaacagaccagaacacgtttg 8211
Query: 313 tcac-acagatcgtgtcattgcatttttgcccc-tggctcatatttttgagttggctttc 370
|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 8210 tcactacagatcgtgtcattgcatttttgccccctggctcatatttttgagttggctttc 8151
Query: 371 gaattgatcactttttactggggcgctacacttggttatgcgaacgttaagacgttgacc 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8150 gaattgatcactttttactggggcgctacacttggttatgcgaacgttaagacgttgacc 8091
Query: 431 gatgcatctgttcgcaactgccaaggtgacatcaaggagttccaaccaactatcatggtt 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8090 gatgcatctgttcgcaactgccaaggtgacatcaaggagttccaaccaactatcatggtt 8031
Query: 491 ggtgttgccgctgtttgggaaagtgttagaaaggggatcttggcacaaattaacaagctt 550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8030 ggtgttgccgctgtttgggaaagtgttagaaaggggatcttggcacaaattaacaagctt 7971
Query: 551 cctgcgttaactcaaaaggtgttctggacaggttactatgccaaattaaaaatgaagaag 610
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7970 cctgcgttaactcaaaaggtgttctggacaggttactatgccaaattaaaaatgaagaag 7911
Query: 611 ttccacattccaggtggtgacactctaggtaacattttgttcaagaaggtcagagaagcc 670
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7910 ttccacattccaggtggtgacactctaggtaacattttgttcaagaaggtcagagaagcc 7851
Query: 671 accggtggtcatttaagatttgtgtttgacggtggtttcccattgtctagagaagcacaa 730
|||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct: 7850 accggtggtcatttaagatttgtgttgaacggtggttccccattgtctagagaagcacaa 7791
Query: 731 gagtttatcacaaacttgattttgtccaatgtntgattggttaaggttttgactgaaacc 790
||||||||||||||||||| |||||||||||| |||||||||| || |||||||||||||
Sbjct: 7790 gagtttatcacaaacttga-tttgtccaatgt-tgattggttatgg-tttgactgaaacc 7734
Query: 791 atggctaacacaactatcttacacccagaacatttggaataccggaatcgctggtg 846
||||||||||||||||||||||| ||||||||||| ||||| |||| |||||||||
Sbjct: 7733 atggctaacacaactatcttacaaccagaacattttgaata-cggagtcgctggtg 7679
>3x_Contig1233
Length = 4604
Score = 391 bits (197), Expect = e-108
Identities = 212/217 (97%)
Strand = Plus / Plus
Query: 47 tacaaggacgctgcagacgcattggctaagattaaagaggttagaccagacattaagatt 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4369 tacaaggacgctgcagacgcattggctaagattaaagaggttagaccagacattaagatt 4428
Query: 107 ctttccatggatgaagtcatcgaattgggtaagaaggctagagatgaaattgaaccacat 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4429 ctttccatggatgaagtcatcgaattgggtaagaaggctagagatgaaattgaaccacat 4488
Query: 167 cctccagcccctgaagatttgtcagctatcatgtacacttccggttccactggtgatcca 226
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 4489 cctccagcccctgaagatttgtcagctatcatgtacacttccaaaaacactggtgatcca 4548
Query: 227 aagggtgtcatcttaaagcattctaatattgttgcag 263
|||||||||||||||||||||||||||||||||||||
Sbjct: 4549 aagggtgtcatcttaaagcattctaatattgttgcag 4585
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5501
Number of Sequences: 1807
Number of extensions: 5501
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 2
length of query: 887
length of database: 10,358,551
effective HSP length: 16
effective length of query: 871
effective length of database: 10,329,639
effective search space: 8997115569
effective search space used: 8997115569
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)