BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC4ZD11FM1.SCF screened BAC_end
(921 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1075 1298 0.0
>3x_Contig1075
Length = 3835
Score = 1298 bits (655), Expect = 0.0
Identities = 747/773 (96%), Gaps = 5/773 (0%)
Strand = Plus / Minus
Query: 90 ctactctcaatattagctgtaacgcaggatatgtcactttccatgtgcgaagcgtctctt 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 893 ctactctcaatattagctgtaacgcaggatatgtcactttccatgtgcgaagcgtctctt 834
Query: 150 ctggagttgaggatggtggtaagttgtataaaaggtttgtcaatattggctcgtatacct 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 833 ctggagttgaggatggtggtaagttgtataaaaggtttgtcaatattggctcgtatacct 774
Query: 210 tttgtagccttgcatccgtgaaattaaaattatatgtatctcgcttgttcaacactgatt 269
||||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 tttgtagcccggtatccttgaaattaaaattatatgtatctcgcttgttcaacactgatt 714
Query: 270 ctagtaatgtgcagagcaacataattccataaactctcacattttctggccctaatgtag 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 ctagtaatgtgcagagcaacataattccataaactctcacattttctggccctaatgtag 654
Query: 330 tgtcatcaattatattaagtattcctggacttatccagggtaggtttgcagaaatttcct 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 tgtcatcaattatattaagtattcctggacttatccagggtaggtttgcagaaatttcct 594
Query: 390 gcttccctaagtgtctcaaaataatataaaataacccaatacttcgtaatccaccattag 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 gcttccctaagtgtctcaaaataatataaaataacccaatacttcgtaatccaccattag 534
Query: 450 tcctccattctttccatcttgattcaccaaacgtttgttcaaagcctaatcttggctgta 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 tcctccattctttccatcttgattcaccaaacgtttgttcaaagcctaatcttggctgta 474
Query: 510 ggccaggtctggagctatcaatcttactgcggcctgaatgggttaaattatcattattga 569
|||||||||||||||| |||||||||| |||||||||| |||||||||||||||||||||
Sbjct: 473 ggccaggtctggagctttcaatcttacggcggcctgaaggggttaaattatcattattga 414
Query: 570 tcccggtcgattttattaacattggtttcaatgcagaaatgaaggaatgtaccanatcat 629
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 413 tcccggtcgattttattaacattggtttcaatgcagaaatgaaggaatgtaccaaatcat 354
Query: 630 gatctcggtccaaataattatctataagatgtgtgactctatctctttgctcgtaccttg 689
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 353 gatctcggtccaaataattatctataagatgtgttactctatctctttgctcgtaccttg 294
Query: 690 tccagtgttcatttaacaaaaagtatgacaagctgaccaatcctttggtaaaccattctt 749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 tccagtgttcatttaacaaaaagtatgacaagctgaccaatcctttggtaaaccattctt 234
Query: 750 cccttatcttaacctttttattcttatcataaaaaaataatcaattgttctactggaatc 809
|| | ||| ||| ||| |||||||||||| | ||||||||||||||||||||| |||||
Sbjct: 233 ccttattctcaacgtttatattcttatcat-agaaaataatcaattgttctact-gaatc 176
Query: 810 tttgcttgggaaccacccattttgtcttcctccaaggttcaaaaaaaaattca 862
||||||||| | ||| || ||||||||||| ||||||| || ||||||||||
Sbjct: 175 tttgcttgg--aacactcaatttgtcttcct-caaggtttaataaaaaattca 126
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7229
Number of Sequences: 1807
Number of extensions: 7229
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 921
length of database: 10,358,551
effective HSP length: 16
effective length of query: 905
effective length of database: 10,329,639
effective search space: 9348323295
effective search space used: 9348323295
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)