BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC4ZD11RM1.SCF screened BAC_end
(957 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1777 1291 0.0
>3x_Contig1777
Length = 26319
Score = 1291 bits (651), Expect = 0.0
Identities = 671/675 (99%), Gaps = 2/675 (0%)
Strand = Plus / Minus
Query: 48 ttgtaagtggtaggttcaaatgaacagagcggcttgaataagacatttttacatttggtt 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7743 ttgtaagtggtaggttcaaatgaacagagcggcttgaataagacatttttacatttggtt 7684
Query: 108 taatattagagtgaaagagattagttgttcttactgctttaataacactgaccataaaaa 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7683 taatattagagtgaaagagattagttgttcttactgctttaataacactgaccataaaaa 7624
Query: 168 agaacaggcaaacttcaggatgtcagaaggtgaagttcaggtgatagaactcataaataa 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7623 agaacaggcaaacttcaggatgtcagaaggtgaagttcaggtgatagaactcataaataa 7564
Query: 228 cttctttcttaagtctgcgcttctacttgagcagtccaaggtagcacataactttgatac 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7563 cttctttcttaagtctgcgcttctacttgagcagtccaaggtagcacataactttgatac 7504
Query: 288 ggaggaggcgctgagggatgggaatcatttgtttaacattgaaactcgcggcgaccctct 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7503 ggaggaggcgctgagggatgggaatcatttgtttaacattgaaactcgcggcgaccctct 7444
Query: 348 gttggaggctcagatccagccctggatcacgtttgatggagtgaagacaatgccgccatt 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7443 gttggaggctcagatccagccctggatcacgtttgatggagtgaagacaatgccgccatt 7384
Query: 408 agtaatagaaacgtacttggatctacgagctttgcaacccaaccatatggtgtatcttca 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7383 agtaatagaaacgtacttggatctacgagctttgcaacccaaccatatggtgtatcttca 7324
Query: 468 tgacgcggatggtaatccatggatggtttgtaaagggggcaagaaaactgagattgtact 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7323 tgacgcggatggtaatccatggatggtttgtaaagggggcaagaaaactgagattgtact 7264
Query: 528 ggaaagatggcttgtagaacttgataagcagacgatagatgacttcatcgattcaaatga 587
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 7263 ggaaagatggcttgtagaacttgataagcagacgatagatgactccatcgattcaaatga 7204
Query: 588 tcctgaaaacttgcataaacaattggtattgttgttccgctacttgtacacgcttaccca 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7203 tcctgaaaacttgcataaacaattggtattgttgttccgctacttgtacacgcttaccca 7144
Query: 648 actcttacctgccaacgacatcattaccaagccccacaattcacaacaggcccgcactta 707
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct: 7143 actcttacctgccaacgacatcattaccaagccacacaattcacaaca-gcccgcactta 7085
Query: 708 ttaaatgttcaaact 722
||||||||||||||
Sbjct: 7084 -taaatgttcaaact 7071
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7089
Number of Sequences: 1807
Number of extensions: 7089
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 957
length of database: 10,358,551
effective HSP length: 16
effective length of query: 941
effective length of database: 10,329,639
effective search space: 9720190299
effective search space used: 9720190299
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)