BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC4ZE01FM1.SCF screened BAC_end
(868 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig452 1338 0.0
>3x_Contig452
Length = 1623
Score = 1338 bits (675), Expect = 0.0
Identities = 711/723 (98%)
Strand = Plus / Plus
Query: 84 cgaaacgaaacacagagatcaacaccaaggcaaggaattagattaagtttgagaagctgg 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 cgaaacgaaacacagagatcaacaccaaggcaaggaattagattaagtttgagaagctgg 801
Query: 144 agtgagggttagtcagacaggttcagctgtgaatatcttgtaagagatatcaggtggata 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 agtgagggttagtcagacaggttcagctgtgaatatcttgtaagagatatcaggtggata 861
Query: 204 tcaggtgaattctttttgtgtacggaaacggaaagaaatggcaaaaaaactgagtgatgg 263
|||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 862 tcaggtgaataccaggtgtgtacggaaacggaaagaaatggcaaaaaaactgagtgatgg 921
Query: 264 acggaaacctgggagtggacgtaaacctggacgagccaagactttggcagaagggcggaa 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 922 acggaaacctgggagtggacgtaaacctggacgagccaagactttggcagaagggcggaa 981
Query: 324 gcccggcagtgggcgcaagaaggggtctaagaaccttggaatcagtaatggggctgttaa 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 982 gcccggcagtgggcgcaagaaggggtctaagaaccttggaatcagtaatggggctgttaa 1041
Query: 384 tgctactggtagtgggacgcgccgctcacgtagctcgtcacagcactacgggatggacca 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1042 tgctactggtagtgggacgcgccgctcacgtagctcgtcacagcactacgggatggacca 1101
Query: 444 ctcatcgtcgtctgcctcttccccaactatagctatggctacttctttgctgcttcaaca 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1102 ctcatcgtcgtctgcctcttccccaactatagctatggctacttctttgctgcttcaaca 1161
Query: 504 gcagcaacagtttcataacgggcaggctcactatgctgctccgcaccgtataatgaaacg 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1162 gcagcaacagtttcataacgggcaggctcactatgctgctccgcaccgtataatgaaacg 1221
Query: 564 gggcacagcggatagcgcaaattcgagttctaattcaagctcgaattcagatccagtatc 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1222 gggcacagcggatagcgcaaattcgagttctaattcaagctcgaattcagatccagtatc 1281
Query: 624 gaaacgagatagagaacttatcgacgccttgaacaagctctcacgttgcaaatcacctcc 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1282 gaaacgagatagagaacttatcgacgccttgaacaagctctcacgttgcaaatcacctcc 1341
Query: 684 acagtcgcctgatccaatgcagacggctaaattacccatgctctcgttcgtctggggttc 743
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1342 acagtcgcctgatccaatgcagacggctaaattacccatgctctcgtcgttctggggttc 1401
Query: 744 ggtggatgtcccactgcgaccagaacatgagcaacagcttcagcattaacttcaacttca 803
|||||||||||||||||||| ||||||||||||||||||||||||| |||| ||||| ||
Sbjct: 1402 ggtggatgtcccactgcgacaagaacatgagcaacagcttcagcatcaactccaactcca 1461
Query: 804 gct 806
|||
Sbjct: 1462 gct 1464
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4317
Number of Sequences: 1807
Number of extensions: 4317
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 1
length of query: 868
length of database: 10,358,551
effective HSP length: 16
effective length of query: 852
effective length of database: 10,329,639
effective search space: 8800852428
effective search space used: 8800852428
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)