BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC4ZE01RM1.SCF screened BAC_end
         (865 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1476                                                        1524   0.0  

>3x_Contig1476 
          Length = 8689

 Score = 1524 bits (769), Expect = 0.0
 Identities = 803/813 (98%), Gaps = 1/813 (0%)
 Strand = Plus / Plus

                                                                        
Query: 46   aattgttggagcatacaatttagaatgacttctacaattttaccactcaattgaattcca 105
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1947 aattgttggagcatacaatttagaatgacttctacaattttaccactcaattgaattcca 2006

                                                                        
Query: 106  attttgcaaaattttagacctaatcgatagttcgtatcctttatatactttaaaatccaa 165
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2007 attttgcaaaattttagacctaatcgatagttcgtatcctttatatactttaaaatccaa 2066

                                                                        
Query: 166  atcaaagtaccaatgccttaccccgaattaccaatacaaatgactagcctaagatgaaaa 225
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2067 atcaaagtaccaatgccttaccccgaattaccaatacaaatgactagcctaagatgaaaa 2126

                                                                        
Query: 226  ccttaagacagacacaagaaaatatactttcgaacaatgacaaatgttcaaaatgtataa 285
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2127 ccttaagacagacacaagaaaatatactttcgaacaatgacaaatgttcaaaatgtataa 2186

                                                                        
Query: 286  taatgtataatgatgtataataacattgatatttctgagggagtgctgatccttttgcaa 345
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2187 taatgtataatgatgtataataacattgatatttctgagggagtgctgatccttttgcaa 2246

                                                                        
Query: 346  cttactcatcttatataagctctcatcgggtcctgcaataaagttcctctccctttagta 405
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2247 cttactcatcttatataagctctcatcgggtcctgcaataaagttcctctccctttagta 2306

                                                                        
Query: 406  agagctgacacattttttttttctgtctacatttaataagcaagtattcgcaacgagtgt 465
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2307 agagctgacacattttttttttctgtctacatttaataagcaagtattcgcaacgagtgt 2366

                                                                        
Query: 466  gatgcagggatgcttatcgtggtgcattaccctgattagtcagggtaataaactcagtgt 525
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2367 gatgcagggatgcttatcgtggtgcattaccctgattagtcagggtaataaactcagtgt 2426

                                                                        
Query: 526  ctgcttcaacacatttgacttttatggttttcagtcaagtaaatattgaaatccatatga 585
            ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 2427 ctgcttcaacacatttgacttttatggttttcagtcaagtaaatattgacatccatatga 2486

                                                                        
Query: 586  aaggatgaacttattattcaattcagagtaattatttgttaataacgataacacattaca 645
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2487 caggatgaacttattattcaattcagagtaattatttgttaataacgataacacattaca 2546

                                                                        
Query: 646  ttctttattaatgatgttttcttggctaaaaaacgaataatattgatcatagacaactgc 705
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2547 ttctttattaatgatgttttcttggctaaaaaacgaataatattgatcatagacaactgc 2606

                                                                        
Query: 706  agtgatcgagcaaactacaccttgttataagaaatacggtatattggatattctggtgaa 765
            |||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||
Sbjct: 2607 agtgatcgagcaaactacacctcgttataagacatacgttatattggatattctggtgaa 2666

                                                                        
Query: 766  cgttttatatactaaggaaaaaaatacgatagaaaagtttgtcccttgttaatcatcata 825
            |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct: 2667 cgttttatatactaaggaaaaaaatacgatagaatagtttgt-ccttgttaatcatcata 2725

                                             
Query: 826  ggttatcttcaaatttaaggggaaaaggaaaag 858
            |||||||||||||||||||| || ||| |||||
Sbjct: 2726 ggttatcttcaaatttaaggagagaagaaaaag 2758


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8790
Number of Sequences: 1807
Number of extensions: 8790
Number of successful extensions: 62
Number of sequences better than 1.0e-20: 1
length of query: 865
length of database: 10,358,551
effective HSP length: 16
effective length of query: 849
effective length of database: 10,329,639
effective search space: 8769863511
effective search space used: 8769863511
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)