BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC4ZE02FM1.SCF screened BAC_end
         (906 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1627                                                        1298   0.0  

>3x_Contig1627 
          Length = 15708

 Score = 1298 bits (655), Expect = 0.0
 Identities = 706/719 (98%), Gaps = 3/719 (0%)
 Strand = Plus / Plus

                                                                       
Query: 89  tcctctggctagtttccgctctacatagaaatgttgaaaacatgaaatttttcaacacgt 148
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 tcctctggctagtttccgctctacatagaaatgttgaaaacatgaaatttttcaacacgt 284

                                                                       
Query: 149 acaagatgatatcaaaaaccatattaaaaacctgtctatgcataaagacattggggcact 208
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 acaagatgatatcaaaaaccatattaaaaacctgtctatgcataaagacattggggcact 344

                                                                       
Query: 209 tatgcttaattgcttt-atcgataagctgttctaagaaacactcttcgctaattccagct 267
           |||||||||||||  | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 tatgcttaattgcaatcatcgataagctgttctaagaaacactcttcgctaattccagct 404

                                                                       
Query: 268 ccgaaaagactaaataaccagaccaaacatgaactctgtactgaaaatgaatactgagtt 327
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 ccgaaaagactaaataaccagaccaaacatgaactctgtactgaaaatgaatactgagtt 464

                                                                       
Query: 328 gggatatcaagagtatctcgagaaaattactcttgaagccaatggtgtaaccagcgatga 387
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 gggatatcaagagtatctcgagaaaattactcttgaagccaatggtgtaaccagcgatga 524

                                                                       
Query: 388 gacgacgttacacagcaaggtggcagacatatttcgagaagaaattgaagtaaacggctg 447
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 gacgacgttacacagcaaggtggcagacatatttcgagaagaaattgaagtaaacggctg 584

                                                                       
Query: 448 tttgagggaaagtttcaatgtttatgaggatgtggatggcaatattgaaaaatggagaag 507
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 tttgagggaaagtttcaatgtttatgaggatgtggatggcaatattgaaaaatggagaag 644

                                                                       
Query: 508 tcaaatatggcttgagagaccagaaatgtccgcagaagtccgatacgcatatttgaagca 567
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 tcaaatatggcttgagagaccagaaatgtccgcagaagtccgatacgcatatttgaagca 704

                                                                       
Query: 568 ccaggaattgtgtctcgaaagactgatatccaaaacgctgccgaaacagcttattgtaca 627
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 ccaggaattgtgtctcgaaagactgatatccaaaacgctgccgaaacagcttattgtaca 764

                                                                       
Query: 628 ggaagaaatgttgaagtcagttacagaacagatcagaggtgtgctagaaactcaaaaaca 687
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 765 agaagaaatgttgaagtcagttacagaacagatcagaggtgtgctagaaactcagaaaca 824

                                                                       
Query: 688 acagttggaacaattatttcaatacagaactaacatggaagaatcttatagacaggaaat 747
           ||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct: 825 acagttggaacaattatctcaatacagaactaacatggaagaatctcatagacaggaaat 884

                                                                      
Query: 748 ggattcattgaataaccgctggcgggtgaagtttgaattacaattttagaaaaggcaac 806
            |||||||||||||||||||||||| ||| | |||||| |||| |||||||||||||||
Sbjct: 885 tgattcattgaataaccgctggcggttgacg-ttgaatgacaa-tttagaaaaggcaac 941


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8040
Number of Sequences: 1807
Number of extensions: 8040
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 906
length of database: 10,358,551
effective HSP length: 16
effective length of query: 890
effective length of database: 10,329,639
effective search space: 9193378710
effective search space used: 9193378710
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)