BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC4ZE03FM1.SCF screened BAC_end
(918 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1673 882 0.0
>3x_Contig1673
Length = 13723
Score = 882 bits (445), Expect = 0.0
Identities = 501/517 (96%), Gaps = 2/517 (0%)
Strand = Plus / Minus
Query: 72 taaattcagtgatgttttccgtcttttaagtgcagtatctgcgttggatttcattccaaa 131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5506 taaattcagtgatgttttccgtcttttaagtgcagtatctgcgttggatttcattccaaa 5447
Query: 132 ggatcagatcagttctttcatggaaaaaaatttcttaagggcaaaaaccgtagaggagat 191
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5446 ggatcagcacagttctttcatggaaaaaaatttcttaagggcaaaaaccgtagaggagat 5387
Query: 192 tatgaagtttttaaatcaggtgatgttcatcatcaggtcagttacttcgagagaaaatgt 251
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5386 tatgaagttgagaaagcaggtgatgttcatcatcaggtcagttacttcgagagaaaatgt 5327
Query: 252 agctgtaaatgttaaagacgaagacttgaagagctcgatccccaccgatgttcaaatcaa 311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5326 agctgtaaatgttaaagacgaagacttgaagagctcgatccccaccgatgttcaaatcaa 5267
Query: 312 attactcaagcaaatgatcacagcaggatttatcgaccaggtggccgttcgcgcagacca 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5266 attactcaagcaaatgatcacagcaggatttatcgaccaggtggccgttcgcgcagacca 5207
Query: 372 gttattcccggaagacgttactatcaacaaaaccaacattttcaatatcccttatgttcc 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5206 gttattcccggaagacgttactatcaacaaaaccaacattttcaatatcccttatgttcc 5147
Query: 432 agtccttgctgagaaaacatcttctttggatgatatctttggttatattcatccaacctc 491
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 5146 agtccttgctgagaaaacatcttctttggatgatatctttgtttatattcatccaacctc 5087
Query: 492 aatttttaacaattctggcgagcaacctccgaaatacttggttttccaatcactacatgt 551
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5086 aattctcaacaattctggcgagcaacctccgaaatacttggttttccaatcactacatgt 5027
Query: 552 tcattaaaattatgatataggc-aaaacaaggatgaa 587
|| ||||| |||| | |||| ||||||||||||||
Sbjct: 5026 caataaaaataatga-aaaggcgaaaacaaggatgaa 4991
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8258
Number of Sequences: 1807
Number of extensions: 8258
Number of successful extensions: 60
Number of sequences better than 1.0e-20: 1
length of query: 918
length of database: 10,358,551
effective HSP length: 16
effective length of query: 902
effective length of database: 10,329,639
effective search space: 9317334378
effective search space used: 9317334378
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)