BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC4ZE03RM1.SCF screened BAC_end
(1019 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1629 1102 0.0
>3x_Contig1629
Length = 12481
Score = 1102 bits (556), Expect = 0.0
Identities = 616/632 (97%), Gaps = 3/632 (0%)
Strand = Plus / Minus
Query: 82 gcttggcctatttaaaaaacatgaaaaagatcaagtgaaaaatttttaatagttcttcat 141
|||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 10497 gcttggactatttaaaaaacatgaaaaa-atcaagtgaaaaatttttaatagttcttcat 10439
Query: 142 ctcatcatatgtaaagttgaaagtgtttaatggtatctactttgtttatttcccttcccc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10438 ctcatcatatgtaaagttgaaagtgtttaatggtatctactttgtttatttcccttcccc 10379
Query: 202 atcgcaaaactctagaacggtaaccacagctctagctagttaatattaatacacaatgtc 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10378 atcgcaaaactctagaacggtaaccacagctctagctagttaatattaatacacaatgtc 10319
Query: 262 tcacagaaagtacgaagctccacgtcacggtcatttaggtttcttgccaagaaagagagc 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10318 tcacagaaagtacgaagctccacgtcacggtcatttaggtttcttgccaagaaagagagc 10259
Query: 322 tgcctctgttagaggtagagttaagtctttcccaaaggacgaccaaactaagccagttgc 381
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 10258 tgcctctgttagaggtagagttaagtctttcccaaaggacgaccaaactaaggcagttgc 10199
Query: 382 tttgacctctttcttgggttacaaggctggtatgtccactatcgttagagacttggacag 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10198 tttgacctctttcttgggttacaaggctggtatgtccactatcgttagagacttggacag 10139
Query: 442 accaggttccaagttccacaagcgtgaagttgttgaagctgttaccgttgttgacacccc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10138 accaggttccaagttccacaagcgtgaagttgttgaagctgttaccgttgttgacacccc 10079
Query: 502 accaatcgttgttgtcggtgttgttggttacgttgaaaccccaagaggtttgagatcctt 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10078 accaatcgttgttgtcggtgttgttggttacgttgaaaccccaagaggtttgagatcctt 10019
Query: 562 gaccaccgtctgggctgaacatttgtccgacgaagtcaagagaagattctacaagaactg 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10018 gaccaccgtctgggctgaacatttgtccgacgaagtcaagagaagattctacaagaactg 9959
Query: 622 gttcatgtccaataagaatgctttcaccaattactctgcttagtacgctgtaaatcgtgc 681
|| || |||||| ||||| ||||||||||| ||||||||| ||||||||| ||| ||||
Sbjct: 9958 gtacaagtccaagaagaaggctttcaccaagtactctgctaagtacgctgaaaacggtgc 9899
Query: 682 cctaagtcgacagaaaaattggccacaatcaa 713
|| |||||||||| | ||||||||| ||||||
Sbjct: 9898 cc-aagtcgacag-agaattggccagaatcaa 9869
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8339
Number of Sequences: 1807
Number of extensions: 8339
Number of successful extensions: 61
Number of sequences better than 1.0e-20: 1
length of query: 1019
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1003
effective length of database: 10,329,639
effective search space: 10360627917
effective search space used: 10360627917
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)