BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC4ZE04FM1.SCF screened BAC_end
(921 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1727 1126 0.0
>3x_Contig1727
Length = 17872
Score = 1126 bits (568), Expect = 0.0
Identities = 634/648 (97%), Gaps = 6/648 (0%)
Strand = Plus / Minus
Query: 88 tgataaggtttcagttacctcattactgtcttcatatttagaattcagctcttctaattg 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6478 tgataaggtttcagttacctcattactgtcttcatatttagaattcagctcttctaattg 6419
Query: 148 tttatcaatagctttaacgtctgtctctaataagttcacactattcgctagagtatccaa 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6418 tttatcaatagctttaacgtctgtctctaataagttcacactattcgctagagtatccaa 6359
Query: 208 ataatactctagttttgttgttccttgctgttcctcatttgctgcgtatataataagttc 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6358 ataatactctagttttgttgttccttgctgttcctcatttgctgcgtatataataagttc 6299
Query: 268 agcaggcttctgaagcacctgaatagtggactcaagttcttttgtaatatgcccactgta 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6298 agcaggcttctgaagcacctgaatagtggactcaagttcttttgtaatatgcccactgta 6239
Query: 328 atagtccatttttgaaagtagactagagcaattggtcttcaattcttctaattggcttgt 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6238 atagtccatttttgaaagtagactagagcaattggtcttcaattcttctaattggcttgt 6179
Query: 388 ctggaaagatgataacaatatgtcgacgaatgcttgaggtacaaaatcatcatcgaaaaa 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6178 ctggaaagatgataacaatatgtcgacgaatgcttgaggtacaaaatcatcatcgaaaaa 6119
Query: 448 catgtctagcaaagggtcattagcaccagatatccttctactcatcgtgtaggaaattat 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6118 catgtctagcaaagggtcattagcaccagatatccttctactcatcgtgtaggaaattat 6059
Query: 508 agtgctatatcgtccttc-aaggtgatttggtggcttacttgggtgtttcatgatcatca 566
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 6058 agtgctatatcgtccttcaaaggtgatttggtggcttacttgggtgtttcatgatcatca 5999
Query: 567 tatttagaggtagaaagttaacttcttcattttgatgttaagatttcaagatgatttttg 626
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5998 tatttagaggtagaaggttaacttcttcattttgatgttaagatttcaagatgatttttg 5939
Query: 627 gtgccttcagatgcacagtaagaaaggtttaaaaagagaaagattccattttcaaagcag 686
|||||||||||||||||||||||||||||| ||||||||| || | || | |||||||||
Sbjct: 5938 gtgccttcagatgcacagtaagaaaggttt-aaaagagaagga-tacaatatcaaagcag 5881
Query: 687 attttactattccacattgattgagagcaacctatgggataatttatt 734
|| |||||| | |||||||| |||||||||| ||| ||||||||||||
Sbjct: 5880 atattacta-tacacattga-tgagagcaacgtat-ggataatttatt 5836
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9210
Number of Sequences: 1807
Number of extensions: 9210
Number of successful extensions: 63
Number of sequences better than 1.0e-20: 1
length of query: 921
length of database: 10,358,551
effective HSP length: 16
effective length of query: 905
effective length of database: 10,329,639
effective search space: 9348323295
effective search space used: 9348323295
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)