BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC4ZE06FM1.SCF screened BAC_end
(957 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig488 728 0.0
>3x_Contig488
Length = 1926
Score = 728 bits (367), Expect = 0.0
Identities = 449/467 (96%), Gaps = 7/467 (1%)
Strand = Plus / Plus
Query: 71 tattcatagagatcggagacgccaggaagttcgataaatcctgatcgacagaatgtgacg 130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 tattcatagagatcggagacgccaggaagttcgataaatcctgatcgacagaatgtgacg 659
Query: 131 aatccagagaatgtagagattggtgtgaatatccgctattagtatgttnttgatatgttt 190
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct: 660 aatccagagaatgtagagattggtgtgaatatccgctattagtatgtt-ttgatat-ttt 717
Query: 191 acccattgatattctatgtttacagcggaattgccttgatgtgattgttttttccttctt 250
||| |||||||| | | | |||||||||||||||||||||||||||||||||||||||
Sbjct: 718 acc-attgatatccagtcct-acagcggaattgccttgatgtgattgttttttccttctt 775
Query: 251 ggcgcacgcttcttaggacacgggcagtgatccggatcattcttacaaacacatcccgat 310
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776 ggcgcacgcttcttatgacacgggcagtgatccggatcattcttacaaacacatcccgat 835
Query: 311 tcttctcttgccttctgtgcgatccgtttcttctcttgtcgcccacaagtgcattggccc 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 836 tcttctcttgccttctgtgcgatccgtttcttctcttgtcgcccacaagtgcattggccc 895
Query: 371 gatggattcgcattcctgttcttccggagttcttt-caatgagcacaagtcgttgacggc 429
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 896 gatggattcgcattcctgttcttccgtagttctttacaatgagcacaagtcgttgacggc 955
Query: 430 ctaccttttcgtttaatcatagtcaacgggctgatctgtatggttacatgtagtcactct 489
|||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 956 ctacctttcggtttaatcatagtcaac-ggctgatctgtatggttacatgtagtcactct 1014
Query: 490 gggtcctctaatacaccttttacaggcata-ttcacaccgttgataa 535
| |||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct: 1015 gtgtcctctaatacacctttcacaggcatatttcacaccgttgataa 1061
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5280
Number of Sequences: 1807
Number of extensions: 5280
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 1
length of query: 957
length of database: 10,358,551
effective HSP length: 16
effective length of query: 941
effective length of database: 10,329,639
effective search space: 9720190299
effective search space used: 9720190299
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)