BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC4ZE06RM1.SCF screened BAC_end
(1070 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1486 908 0.0
>3x_Contig1486
Length = 12131
Score = 908 bits (458), Expect = 0.0
Identities = 473/478 (98%)
Strand = Plus / Plus
Query: 79 tttgaagcagcatcagacataggatggataaagtatctacggagtcatcagagtgttcaa 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21 tttgaagcagcatcagacataggatggataaagtatctacggagtcatcagagtgttcaa 80
Query: 139 tcagattacgttttgatgctgattgacatgaggaattcctggttattacctgtatcgttt 198
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81 tcagattacgttttgatgctgattgacatgaggaattcctggttattacctgtatcgtta 140
Query: 199 tctttccactatgatgagtatgtttctgagagggaaagtttggattctatctatacgaga 258
||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||
Sbjct: 141 tctttccactatgatgagtatgtttctgagagggaaagtttggattctaacgagacgaga 200
Query: 259 agatttgtggtaccaattcgaaagatcgcaaactatgacgattctccaaattttaaggac 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agatttgtggtaccaattcgaaagatcgcaaactatgacgattctccaaattttaaggac 260
Query: 319 aaacttatcccgagaattgatgaaagtaaacaatatctaacctctggactcactttaacc 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaacttatcccgagaattgatgaaagtaaacaatatctaacctctggactcactttaacc 320
Query: 379 caagaaaatgagatgagagaaaagttctggtgcagagaacacatcctaaaccgcttaaag 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caagaaaatgagatgagagaaaagttctggtgcagagaacacatcctaaaccgcttaaag 380
Query: 439 tgcacatgggatactgccttaaatgaacatactgaagggtctgttgaatttcgccagttt 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgcacatgggatactgccttaaatgaacatactgaagggtctgttgaatttcgccagttt 440
Query: 499 gtataaaaactcgataaacaagtgatctcactggtgtacccaccatcaaatgtgtttg 556
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtagaaaaactcgataaacaagtgatctcactggtgtacccaccatcaaatgtgtttg 498
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6932
Number of Sequences: 1807
Number of extensions: 6932
Number of successful extensions: 39
Number of sequences better than 1.0e-20: 1
length of query: 1070
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1054
effective length of database: 10,329,639
effective search space: 10887439506
effective search space used: 10887439506
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)