BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC4ZE08FM1.SCF screened BAC_end
(896 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1442 1308 0.0
>3x_Contig1442
Length = 8270
Score = 1308 bits (660), Expect = 0.0
Identities = 720/736 (97%), Gaps = 3/736 (0%)
Strand = Plus / Plus
Query: 87 taccttataattaaaagttttactagaatccgtttactttgttgtgcgatcaagcgttaa 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5246 taccttataattaaaagttttactagaatccgtttactttgttgtgcgatcaagcgttaa 5305
Query: 147 aacatgtctagccagtcttcttcttcccagctttggaggttagcaagacgctacagagaa 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5306 aacatgtctagccagtcttcttcttcccagctttggaggttagcaagacgctacagagaa 5365
Query: 207 gtcattggggggt-caataaactacaaagagagcatgtaggcgtcactgctggtactggt 265
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5366 gtcattggggtgttcaataaactacaaagagagcatgtaggcgtcactgctggtactggt 5425
Query: 266 aatgtaggttccacgaataagaaatctgttcgtgttaatacagtacgtaaatctactgct 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5426 aatgtaggttccacgaataagaaatctgttcgtgttaatacagtacgtaaatctactgct 5485
Query: 326 cctattggtcttcccctgcttcagattgttactaatctgcataagttgttcccattatct 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5486 cctattggtcttcccctgcttcagattgttactaatctgcataagttgttcccattatct 5545
Query: 386 ttcgcagagtctcttaaagattataaacaatacaatatcaataaagaacaattccaagag 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5546 ttcgcagagtctcttaaagattataaacaatacaatatcaataaagaacaattccaagag 5605
Query: 446 gatttattatcagtgttaccgtactatcctgagccatctgcgaggttttcttccaaaatc 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5606 gatttattatcagtgttaccgtactatcctgagccatctgcgaggttttcttccaaaatc 5665
Query: 506 atcaagactcctatagatgctgctggtaattacattaacgaatttcaaatcacaccgata 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5666 atcaagactcctatagatgctgctggtaattacattaacgaatttcaaatcacaccgata 5725
Query: 566 cggccagaaagtgatggaaaaccattgaaacatataatcttggttcatgggtatggtgct 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5726 cggccagaaagtgatggaaaaccattgaaacatataatcttggttcatgggtatggtgct 5785
Query: 626 ggtttaggtttttacttgaaaaactttaatgcgttgctatcagaaaacgtggtggtacat 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5786 ggtttaggtttttacttgaaaaactttaatgcgttgctatcagaaaacgtggtggtacat 5845
Query: 686 gccatcgatttacctggttattgcttcttttcgcgaccaatgttcccattccattatcca 745
||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct: 5846 gccatcgatttacctggttatggcttctcttcgcgaccaatgttcccattccattatcc- 5904
Query: 746 aaaggattcgtattttgcggtagaaaaactctttcatgatgcctttgccaaatggtttcg 805
||||||||||||| ||||||||||| | ||| ||||||||||| ||||||| ||||
Sbjct: 5905 aaaggattcgtatcttgcggtagaagactacttccatgatgccttgcacaaatgg-ttcg 5963
Query: 806 aaaaaaaaggacttat 821
| ||||||||||||||
Sbjct: 5964 ataaaaaaggacttat 5979
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8626
Number of Sequences: 1807
Number of extensions: 8626
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 1
length of query: 896
length of database: 10,358,551
effective HSP length: 16
effective length of query: 880
effective length of database: 10,329,639
effective search space: 9090082320
effective search space used: 9090082320
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)