BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC4ZE08RM1.SCF screened BAC_end
         (962 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig760                                                          787   0.0  

>3x_Contig760 
          Length = 2736

 Score =  787 bits (397), Expect = 0.0
 Identities = 465/481 (96%), Gaps = 5/481 (1%)
 Strand = Plus / Plus

                                                                        
Query: 47   tatttctttgcacatacgtcaagagagcatgtttatttagttgtaagagtatttaaatct 106
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1527 tatttctttgcacatacgtcaagagagcatgtttatttagttgtaagagtatttaaatct 1586

                                                                        
Query: 107  caatatattgccaaaacacatggccttacgcgccttccatgtcattaatcaactgcagct 166
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1587 caatatattgccaaaacacatggccttacgcgccttccatgtcattaatcaactgcagct 1646

                                                                        
Query: 167  cttccctagtacaagtcatggatagcctaggttccttcaaatttaaggtccctttttctt 226
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1647 cttccctagtacaagtcatggatagcctaggttccttcaaatttaaggtccctttttctt 1706

                                                                        
Query: 227  tcaaaaaataaatgagacgaataacgatatcgtaaagaactcttaagttaaaatttacta 286
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1707 tcaaaaaataaatgagacgaataacgatatcgtaaagaactcttaagttaaaatttacta 1766

                                                                        
Query: 287  cagttataggcaaaaatctaccagtgaagaagtggatttagagacaattaacctgtcatt 346
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1767 cagttataggcaaaaatctaccagtgaagaagtggatttagagacaattaacctgtcatt 1826

                                                                        
Query: 347  ttaaaggtaaattgggttgaacataaattcacactgtgaaaatcatattatgtctgaatt 406
            || ||||||||||| | ||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 1827 tt-aaggtaaattgtggtgaacatcaattcacactgtgaaaatcatattatgtctgaatt 1885

                                                                        
Query: 407  tgaaaagattgtgagagatattgaattcgattcccctccagaggaaaactcttttggttt 466
            ||| ||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||
Sbjct: 1886 tgagaagattgtgagagatattgtattcgattcccctccagaggaaatctc-tttggttt 1944

                                                                        
Query: 467  acgataattttacaagtgtttaaaccatgggtcaaagcaagccacagattgctttaatta 526
            ||||||| | |||||||| |||| | || ||||||||||||| ||||||||||| |||||
Sbjct: 1945 acgataa-tctacaagtg-ttaagcgat-ggtcaaagcaagcaacagattgcttcaatta 2001

             
Query: 527  t 527
            |
Sbjct: 2002 t 2002


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8813
Number of Sequences: 1807
Number of extensions: 8813
Number of successful extensions: 62
Number of sequences better than 1.0e-20: 1
length of query: 962
length of database: 10,358,551
effective HSP length: 16
effective length of query: 946
effective length of database: 10,329,639
effective search space: 9771838494
effective search space used: 9771838494
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)