BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC4ZE09FM1.SCF screened BAC_end
(908 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1498 985 0.0
>3x_Contig1498
Length = 12634
Score = 985 bits (497), Expect = 0.0
Identities = 551/565 (97%), Gaps = 3/565 (0%)
Strand = Plus / Plus
Query: 74 tggatttgtttaagaaactatcttcaaacaatttattgtagtaacccaccagctaaagag 133
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 10545 tggatttgtttaagaaactatcttcaaagaatttattgtagtaacccaccagctaaagag 10604
Query: 134 cgggaaaaaaaaacgggtagcagaaaggatcagatatagttcggtcctgaattgggctta 193
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 10605 cgggaaaaaaaaacgggtagcagaaagggtcagatatagttcggtcctgaattgggctta 10664
Query: 194 actaaggcttgtttcactcaccaattgtaatggatatccttaaacaagttgtactatgac 253
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10665 actaaggcttggttcactcaccaattgtaatggatatccttaaacaagttgtactatgac 10724
Query: 254 cgctcatctcttctctcacaccatgtccttcaaattttttgatacttgaagctatcatat 313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10725 cgctcatctcttctctcacaccatgtccttcaaattttttgatacttgaagctatcatat 10784
Query: 314 tgaacggtaaagctataacataagcagatcagacacaaatataaaggtttgtgatcatac 373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10785 tgaacggtaaagctataacataagcagatcagacacaaatataaaggtttgtgatcatac 10844
Query: 374 tatcaggggctgccactgcacaattgcggcgaatgttcaccacgtcagtgcttcatttga 433
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 10845 tatcaggggctgccactgcacaattgcggcgaatgttcaccacgtcagtgcttca-ttga 10903
Query: 434 attcttataacttacttttgaactgagtaaaatcgatttttcattatctagtgaaatcgg 493
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 10904 attcttataacttacttttgaactgagtaaaatcga-ttttcattatctagtgaaatcgg 10962
Query: 494 agatatcatgatttgtataagatacataacacaatatccattggattggtaaggggaaat 553
||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |
Sbjct: 10963 agatatcatgatttgtataagatacataacacaatatacattggattggtaaggtgaatt 11022
Query: 554 acctatcgtattgagacgagaactggcgatcatctgatacttggtaattaaaacccggat 613
||||||||||||||||||||||||||||||||||||||||||||||| |||| || |||
Sbjct: 11023 acctatcgtattgagacgagaactggcgatcatctgatacttggtaa-taaatacctgat 11081
Query: 614 aaaagacagacgggtaagtttggga 638
| ||||||||||| |||||||||||
Sbjct: 11082 agaagacagacggttaagtttggga 11106
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6352
Number of Sequences: 1807
Number of extensions: 6352
Number of successful extensions: 39
Number of sequences better than 1.0e-20: 1
length of query: 908
length of database: 10,358,551
effective HSP length: 16
effective length of query: 892
effective length of database: 10,329,639
effective search space: 9214037988
effective search space used: 9214037988
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)