BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC4ZE09RM1.SCF screened BAC_end
         (857 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1218                                                         842   0.0  

>3x_Contig1218 
          Length = 5511

 Score =  842 bits (425), Expect = 0.0
 Identities = 474/490 (96%), Gaps = 1/490 (0%)
 Strand = Plus / Minus

                                                                        
Query: 18   acanagggcctaagtngtntgcttttttgatggttgaatgactgattttttgggtattga 77
            ||| ||||||||||| || ||| ||||||||||||||||||||||||| |||||||||||
Sbjct: 2568 acaaagggcctaagtagtatgcatttttgatggttgaatgactgatttgttgggtattga 2509

                                                                        
Query: 78   tgtgtatttctagtgtttctggtacatggctaatgattcatggtagatcaaagtgtgggg 137
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2508 tgtgtatttctagtgtttctggtacatggctaatgattcatggtagatcaaagtgtgggg 2449

                                                                        
Query: 138  gtgaaaaattgtgattgtgtagttgaactaacgttgaaaagtttatataaagaggataga 197
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2448 gtgaaaaattgggattgtgtagttgaactaacgttgaaaagtttatataaagaggataga 2389

                                                                        
Query: 198  atcttctgaaatagttattcaagtgtcctcatcttcatctctatatctagttctctttta 257
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2388 atcttctgaaatagttattcaagtgtcctcatcttcatctctatatctagttctctttta 2329

                                                                        
Query: 258  tcaatcactcattcactctgaattataggaatcactgcaaagcaaaagatatagtcccac 317
            |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 2328 tcaatcactcattcactctgaattatagtaatcactgcaaagcaaaagatatagtcccac 2269

                                                                        
Query: 318  tacaccgaaattaccatgggtctaggcaattggagaaagtatttcccacatgagaggatc 377
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2268 tacaccgaaattaccatgggtctaggcaattggagaaagtatttcccacatgagaggatc 2209

                                                                        
Query: 378  gtcaaggaatattcttcagaagttgatgtatttgctgaagattatagcgaagtgagttct 437
            ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 2208 gtcaaggaatattcttcagaagttgatgtatctgctgaagattatagcgaagtgagttct 2149

                                                                        
Query: 438  aatgagcaaggaacggacaagaaagctttttcaagaccctgaaaataccaaacgtgtttt 497
            ||||||||||||||||| ||| ||||||| ||| |||| |||||  ||||||||||||| 
Sbjct: 2148 aatgagcaaggaacggagaag-aagctttctcaggaccatgaaatcaccaaacgtgtttc 2090

                      
Query: 498  cgtggttacc 507
            ||||||||||
Sbjct: 2089 cgtggttacc 2080


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8221
Number of Sequences: 1807
Number of extensions: 8221
Number of successful extensions: 63
Number of sequences better than 1.0e-20: 1
length of query: 857
length of database: 10,358,551
effective HSP length: 16
effective length of query: 841
effective length of database: 10,329,639
effective search space: 8687226399
effective search space used: 8687226399
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)