BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC4ZE10FM1.SCF screened BAC_end
(890 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1414 775 0.0
>3x_Contig1414
Length = 7923
Score = 775 bits (391), Expect = 0.0
Identities = 480/502 (95%), Gaps = 6/502 (1%)
Strand = Plus / Plus
Query: 86 ttgcaattggtttttacaatccttgggatgctttctctttcagtgtgtgagtgttagctt 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7001 ttgcaattggtttttacaatccttgggatgctttctctttcagtgtgtgagtgttagctt 7060
Query: 146 ctctatcgctggccaccattgcatacgatttaaccaagtgagttgaagtgatgaatttta 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7061 ctctatcgctggccaccattgcatacgatttaaccaagtgagttgaagtgatgaatttta 7120
Query: 206 ttacccggaaaacataacattataccaatatagcactatataatatcatcataaagattg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7121 ttacccggaaaacataacattataccaatatagcactatataatatcatcataaagattg 7180
Query: 266 ccttttgaggcgtgatggttatagttatattgtcacaatcatcgctttttcgatttagat 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7181 ccttttgaggcgtgatggttatagttatattgtcacaatcatcgctttttcgatttagat 7240
Query: 326 ctcaagtttcgagcaactgaagtgattttgcgagcttgntttcttttcttgcttctttta 385
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 7241 ctcaagtttcgagcaactgaagtgattttgcgagcttgttttcttttcttgcttctttta 7300
Query: 386 cgctttgaaggttttggactgctgttctctgtggcgcgtggtctttttttcaccggtgtt 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7301 cgctttgaaggttttggactgctgttctctgtggcgcgtggtctttttttcaccggtgtt 7360
Query: 446 ctctggtgaagtgtttctgctttttaaata-tgactggaat-tcagctg-gtttgactct 502
||||| ||| ||||||||||||||| |||| |||||||||| ||||||| || |||||||
Sbjct: 7361 ctctgctgaggtgtttctgctttttcaatagtgactggaatatcagctgcgtctgactct 7420
Query: 503 tc-tttttgatttc-attggaattcaacctgctc-ggtagaagttttttatttttgacca 559
|| |||| |||||| |||||||| | ||||||| |||||| |||| | ||||||||||
Sbjct: 7421 tcattttcgatttcaattggaatcgagcctgctcgggtagatgtttctagtttttgacca 7480
Query: 560 gaaaacgtaatgggatttgcgt 581
| | ||||||| ||||||||||
Sbjct: 7481 ggagacgtaataggatttgcgt 7502
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,676
Number of Sequences: 1807
Number of extensions: 14676
Number of successful extensions: 258
Number of sequences better than 1.0e-20: 1
length of query: 890
length of database: 10,358,551
effective HSP length: 16
effective length of query: 874
effective length of database: 10,329,639
effective search space: 9028104486
effective search space used: 9028104486
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)