BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC4ZE10RM1.SCF screened BAC_end
         (890 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig742                                                         1318   0.0  

>3x_Contig742 
          Length = 2433

 Score = 1318 bits (665), Expect = 0.0
 Identities = 748/768 (97%), Gaps = 7/768 (0%)
 Strand = Plus / Minus

                                                                       
Query: 48  gcttgaataataattactaaccagaaactaccacacaccattatttaccagttggacttg 107
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 909 gcttgaataataattactaaccagaaactaccacacaccattatttaccagttggacttg 850

                                                                       
Query: 108 gatcacaatcaaatcaagccgtctttggccaacaagaaaataccacgaaatctaaactag 167
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 849 gatcacaatcaaatcaagccgtctttggccaacaagaaaataccacgaaatctaaactag 790

                                                                       
Query: 168 tacagttgattggcgcagtacaaacattgttaagaagtatgttcactttagttcgtttca 227
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 tacagttgattggcgcagtacaaacattgttaagaagtatgttcactttagttcgtttca 730

                                                                       
Query: 228 ggtgtcagtaacatgcactgcaatggtgattctaccatttcaccccttacaattgctgag 287
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 ggtgtcagtaacatgcactgcaatggtgattctaccatttcaccccttacaattgctgag 670

                                                                       
Query: 288 ttttactaactaatgattaatttcaaccttttattacagtcccactaatcggtattaaca 347
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 ttttactaactaatgattaatttcaaccttttattacagtcccactaatcggtattaaca 610

                                                                       
Query: 348 ttctcgtgataatatacgaagtccttctaggttgaaatagcacatatacgcagattatgt 407
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 ttctcgtgataatatacgaagtccttctaggttgaaatagcacatatacgcagattatgt 550

                                                                       
Query: 408 acaataaatagagatagttcggaatatcaataacttatactggtggcaatttaggtttat 467
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 acaataaatagagatagttcggaatatcaataacttatactggtggcaatttaggtttat 490

                                                                       
Query: 468 catgatgctggttgtattgcttatcactattataaaacaattatttaaagtttccatcaa 527
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 catgatgctggttgtattgcttatcactattataaaacaattatttaaagtttccatcaa 430

                                                                       
Query: 528 tgtcctttcaacttcgtgatggtgggaaatatccacaaaaagaaaatagaatatcaagga 587
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 tgtcctttcaacttcgtgatggtgggaaatatccacaaaaagaaaatagaatatcaagga 370

                                                                       
Query: 588 agctaagaaagggtaaagcgagtgaattgaatggtatgtcattatggttaggcgagcatc 647
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 agctaagaaagggtaaagcgagtgaattgaatggtatgtcattatggttaggcgagcatc 310

                                                                       
Query: 648 agttgctttgttggttgttgacagcacttgatgttgaattttgagcagcgagaatgtttg 707
           |||||||||||||||  ||||||||||||||||||| |||||||||||||||| ||||||
Sbjct: 309 agttgctttgttggtgtttgacagcacttgatgttgtattttgagcagcgagattgtttg 250

                                                                       
Query: 708 cattctattatcgttttc-aaacgagggatttaaaacttggttgtagcttatttaccttt 766
           ||||||| ||||| |||| |||||| ||| || | |||| | ||||||| |||||||  |
Sbjct: 249 cattcta-tatcgctttcaaaacgatgga-ttcagactt-gctgtagctcatttacc--t 195

                                                           
Query: 767 ttcggtttataaatttgggcaaaatgtcaaggtgtgagattctcgtct 814
           ||| || |||||||||| |||||||||||||||||||| |||||||||
Sbjct: 194 ttccgtctataaatttgtgcaaaatgtcaaggtgtgag-ttctcgtct 148


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7034
Number of Sequences: 1807
Number of extensions: 7034
Number of successful extensions: 38
Number of sequences better than 1.0e-20: 1
length of query: 890
length of database: 10,358,551
effective HSP length: 16
effective length of query: 874
effective length of database: 10,329,639
effective search space: 9028104486
effective search space used: 9028104486
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)