BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC4ZE10RM1.SCF screened BAC_end (890 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig742 1318 0.0 >3x_Contig742 Length = 2433 Score = 1318 bits (665), Expect = 0.0 Identities = 748/768 (97%), Gaps = 7/768 (0%) Strand = Plus / Minus Query: 48 gcttgaataataattactaaccagaaactaccacacaccattatttaccagttggacttg 107 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 909 gcttgaataataattactaaccagaaactaccacacaccattatttaccagttggacttg 850 Query: 108 gatcacaatcaaatcaagccgtctttggccaacaagaaaataccacgaaatctaaactag 167 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 849 gatcacaatcaaatcaagccgtctttggccaacaagaaaataccacgaaatctaaactag 790 Query: 168 tacagttgattggcgcagtacaaacattgttaagaagtatgttcactttagttcgtttca 227 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 789 tacagttgattggcgcagtacaaacattgttaagaagtatgttcactttagttcgtttca 730 Query: 228 ggtgtcagtaacatgcactgcaatggtgattctaccatttcaccccttacaattgctgag 287 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 729 ggtgtcagtaacatgcactgcaatggtgattctaccatttcaccccttacaattgctgag 670 Query: 288 ttttactaactaatgattaatttcaaccttttattacagtcccactaatcggtattaaca 347 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 669 ttttactaactaatgattaatttcaaccttttattacagtcccactaatcggtattaaca 610 Query: 348 ttctcgtgataatatacgaagtccttctaggttgaaatagcacatatacgcagattatgt 407 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 609 ttctcgtgataatatacgaagtccttctaggttgaaatagcacatatacgcagattatgt 550 Query: 408 acaataaatagagatagttcggaatatcaataacttatactggtggcaatttaggtttat 467 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 549 acaataaatagagatagttcggaatatcaataacttatactggtggcaatttaggtttat 490 Query: 468 catgatgctggttgtattgcttatcactattataaaacaattatttaaagtttccatcaa 527 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 489 catgatgctggttgtattgcttatcactattataaaacaattatttaaagtttccatcaa 430 Query: 528 tgtcctttcaacttcgtgatggtgggaaatatccacaaaaagaaaatagaatatcaagga 587 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 429 tgtcctttcaacttcgtgatggtgggaaatatccacaaaaagaaaatagaatatcaagga 370 Query: 588 agctaagaaagggtaaagcgagtgaattgaatggtatgtcattatggttaggcgagcatc 647 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 369 agctaagaaagggtaaagcgagtgaattgaatggtatgtcattatggttaggcgagcatc 310 Query: 648 agttgctttgttggttgttgacagcacttgatgttgaattttgagcagcgagaatgtttg 707 ||||||||||||||| ||||||||||||||||||| |||||||||||||||| |||||| Sbjct: 309 agttgctttgttggtgtttgacagcacttgatgttgtattttgagcagcgagattgtttg 250 Query: 708 cattctattatcgttttc-aaacgagggatttaaaacttggttgtagcttatttaccttt 766 ||||||| ||||| |||| |||||| ||| || | |||| | ||||||| ||||||| | Sbjct: 249 cattcta-tatcgctttcaaaacgatgga-ttcagactt-gctgtagctcatttacc--t 195 Query: 767 ttcggtttataaatttgggcaaaatgtcaaggtgtgagattctcgtct 814 ||| || |||||||||| |||||||||||||||||||| ||||||||| Sbjct: 194 ttccgtctataaatttgtgcaaaatgtcaaggtgtgag-ttctcgtct 148 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7034 Number of Sequences: 1807 Number of extensions: 7034 Number of successful extensions: 38 Number of sequences better than 1.0e-20: 1 length of query: 890 length of database: 10,358,551 effective HSP length: 16 effective length of query: 874 effective length of database: 10,329,639 effective search space: 9028104486 effective search space used: 9028104486 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)