BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC4ZE11FM1.SCF screened BAC_end (911 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1714 954 0.0 >3x_Contig1714 Length = 18873 Score = 954 bits (481), Expect = 0.0 Identities = 569/597 (95%), Gaps = 1/597 (0%) Strand = Plus / Plus Query: 91 ccaaacatttaagagaagctggttccatgttgggtagattcgctctacaaaagcccggga 150 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5215 ccaaacatttaagagaagctggttccatgttgggtagattcgctctacaaaagcccggga 5274 Query: 151 cctctttcgaggatgccaactttgctgaatggatgtcttacttcgaaactccagaatggg 210 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 5275 cctctttcgaggatgccaactctgctgaatggatgtcttacttcgaaactccagaatggg 5334 Query: 211 ttgatcctaagttagttaatggagtggcaaaggtttccctaaaggctcctaagcttttcg 270 ||||||| || | | |||| |||||||||||||||||||||||||||||||||||||| Sbjct: 5335 ttgatccaaatgttgataatttagtggcaaaggtttccctaaaggctcctaagcttttcg 5394 Query: 271 ttccaaaccacccagacatcgatcttgttcaaggtcctgacggaaaaactttacgaattg 330 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5395 ttccaaaccacccagacatcgatcttgttcaaggtcctgacggaaaaactttacgaattg 5454 Query: 331 ttgccgttgatgtgggtatgaagtacaaccaaatccgttgtttcgtcaagcgtggtgttg 390 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5455 ttgccgttgatgtgggtatgaagtacaaccaaatccgttgtttcgtcaagcgtggtgttg 5514 Query: 391 aattgttggttgttccatgggattacgacttcaccaccgaagaatatgacggtttgttca 450 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5515 aattgttggttgttccatgggattacgacttcaccaccgaagaatatgacggtttgttca 5574 Query: 451 tctctaatggtcctggtaatccagccattctgcatgaagtgtccgatagattgactaaag 510 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 5575 tctctaatggtcctggtaatccagccattctgcaggaagtgtccgatagattgactaaag 5634 Query: 511 ttttaaatgcgaagaagaccccagtcttcggtatctgtttgggtcatcaattactagctt 570 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5635 ttttagatgcgaagaagaccccagtcttcggtatctgtttgggtcatcaattactagctc 5694 Query: 571 gggcttctggggcctaaaccttgaaaatgaaggtccgtaccagaggtcacaataattcat 630 | |||||||| |||| ||| ||||| |||||| || ||| |||||||||||||| | ||| Sbjct: 5695 gtgcttctggtgcctcaactttgaagatgaagttcggtaacagaggtcacaatattccat 5754 Query: 631 gttcttcgactgtctctggtaagaaggtctatcacttttcaaaaccagggtttcgct 687 || ||||||||||||||||| ||| | | |||||||| ||||||||| ||||||||| Sbjct: 5755 gtacttcgactgtctctggt-agatgttatatcacttctcaaaaccatggtttcgct 5810 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6223 Number of Sequences: 1807 Number of extensions: 6223 Number of successful extensions: 48 Number of sequences better than 1.0e-20: 1 length of query: 911 length of database: 10,358,551 effective HSP length: 16 effective length of query: 895 effective length of database: 10,329,639 effective search space: 9245026905 effective search space used: 9245026905 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)