BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC4ZE12FM1.SCF screened BAC_end
(1048 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1516 664 0.0
>3x_Contig1516
Length = 8750
Score = 664 bits (335), Expect = 0.0
Identities = 365/375 (97%)
Strand = Plus / Minus
Query: 132 cttgctcatggtcttttcaccttctctaacccagactcttgggtcgtagtacttcttgtt 191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5487 cttgctcatggtcttttcaccttctctaacccagactcttgggtcgtagtacttcttgtt 5428
Query: 192 tggagagtcttcaccggttgggttaccgactggggtcatcaagtagtccttcttgttcat 251
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5427 tggagagtcttcaccggttgggttaccgactggggtcatcaagtagtccttcttgttcaa 5368
Query: 252 tattttttctctgataccggacaagtaagcgaattgacagtcagtatccaagttgacctt 311
| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5367 gacgtagtctctgataccggacaagtaagcgaattgacagtcagtatccaagttgacctt 5308
Query: 312 tacgacaccgaaatcgatggcagtatggaagtccttggtggaggaaccggaaccaccgtg 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5307 tacgacaccgaaatcgatggcagtatggaagtccttggtggaggaaccggaaccaccgtg 5248
Query: 372 gaagaccaagtacaatggcttgtcttctgccttcttgtttaattgcttatcagcgtagtc 431
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 5247 gaagaccaagtacaatggcttgtcttctgccttcttgtttaattgcttagcagcgtagtc 5188
Query: 432 ttggaaagtacccaacaattctggttttagggcagcggcgatcttgtaaactccgtggac 491
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 5187 ttggaaagtacccaacaattctggttttagggcagcggcgatcttgtaaacaccgtggac 5128
Query: 492 ttttccgaaggcact 506
|| |||||||||||
Sbjct: 5127 gttaccgaaggcact 5113
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 40,847
Number of Sequences: 1807
Number of extensions: 40847
Number of successful extensions: 5605
Number of sequences better than 1.0e-20: 1
length of query: 1048
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1032
effective length of database: 10,329,639
effective search space: 10660187448
effective search space used: 10660187448
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)