BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC4ZE12RM1.SCF screened BAC_end
(1005 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1613 904 0.0
>3x_Contig1613
Length = 13977
Score = 904 bits (456), Expect = 0.0
Identities = 530/548 (96%), Gaps = 5/548 (0%)
Strand = Plus / Plus
Query: 76 cttccttgtaacgacctttacccattaac-aacggggagattcaggacagaatgggattt 134
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 7927 cttccttgtaacgacctttacccattaaccaacggggagattcaggacagaatgggattt 7986
Query: 135 gcactaaaactaaaatagcaggaatcatagcactggctaacattaatctccaattcaacc 194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7987 gcactaaaactaaaatagcaggaatcatagcactggctaacattaatctccaattcaacc 8046
Query: 195 caccggcaataccagctcttccaactctgtaaaagatcaaagagaaaacgtaaccccaca 254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8047 caccggcaataccagctcttccaactctgtaaaagatcaaagagaaaacgtaaccccaca 8106
Query: 255 tgataccgaaagcagtgaaagtttgccagttcatacagatgataccacgtaactttttgg 314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8107 tgataccgaaagcagtgaaagtttgccagttcatacagatgataccacgtaactttttgg 8166
Query: 315 tagaacattcagccaagtaaacggaagtcgtagcactcttaggaccgataccaaaaccca 374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8167 tagaacattcagccaagtaaacggaagtcgtagcactcttaggaccgataccaaaaccca 8226
Query: 375 acaaaaatctcatggcaaacaaatagtgccaccctggagtaccagctggaccgaaagctt 434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8227 acaaaaatctcatggcaaacaaatagtgccaccctggagtaccagctggaccgaaagctt 8286
Query: 435 gtaagaaacaggtgatagcagagatagcacaagtgatgaaaataacctttttacgaccaa 494
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8287 gtaagacacaggtgatagcagagatagcacaagtgatgaaaataacctttttacgaccaa 8346
Query: 495 acatattgttcaaccaatcgggtgcccatcacgagacaccagcaccacttagataagggg 554
||||||||||||||||||||| ||||| |||||||||||||||| || ||||||||| |
Sbjct: 8347 acatattgttcaaccaatcggtagcccaacacgagacaccagcacaacatagataaggtg 8406
Query: 555 ctaccg-taacaataccttccaaccgattggtccgttttgggatcctgaccctaaaccca 613
| |||| |||||| ||||||||||| | | |||| | || ||||||||||||||||||||
Sbjct: 8407 c-accgttaacaagaccttccaacc-aatcgtccctctt-ggatcctgaccctaaaccca 8463
Query: 614 atttttta 621
||| ||||
Sbjct: 8464 attcttta 8471
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6672
Number of Sequences: 1807
Number of extensions: 6672
Number of successful extensions: 37
Number of sequences better than 1.0e-20: 1
length of query: 1005
length of database: 10,358,551
effective HSP length: 16
effective length of query: 989
effective length of database: 10,329,639
effective search space: 10216012971
effective search space used: 10216012971
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)