BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC4ZF01FM1.SCF screened BAC_end
(891 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1775 1197 0.0
>3x_Contig1775
Length = 26320
Score = 1197 bits (604), Expect = 0.0
Identities = 671/690 (97%), Gaps = 3/690 (0%)
Strand = Plus / Plus
Query: 86 ctttcttgttattagtgctaatttgatttgatgtggtgatatcctgttggatggatctgc 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21432 ctttcttgttattagtgctaatttgatttgatgtggtgatatcctgttggatggatctgc 21491
Query: 146 tggaatgttcaactgagaaatttcttggattgaaagccgttgtagaatggactcatctaa 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21492 tggaatgttcaactgagaaatttcttggattgaaagccgttgtagaatggactcatctaa 21551
Query: 206 gttgaggtcaggcaataaatttttctgtttcatactagtttctaatgcatacagtcgtaa 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21552 gttgaggtcaggcaataaatttttctgtttcatactagtttctaatgcatacagtcgtaa 21611
Query: 266 aaaggatggatttagcgtctgttggcgagttctcttttgcgttatgggatccaatgtgat 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21612 aaaggatggatttagcgtctgttggcgagttctcttttgcgttatgggatccaatgtgat 21671
Query: 326 ggattccatgctattagtttgtagatgctgttgctgtgaagagttgggccagtgctccat 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21672 ggattccatgctattagtttgtagatgctgttgctgtgaagagttgggccagtgctccat 21731
Query: 386 ctctacaacttgttcttgtaaaaagatcggtttgaatttcctgtgacgtttatgctcttg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21732 ctctacaacttgttcttgtaaaaagatcggtttgaatttcctgtgacgtttatgctcttg 21791
Query: 446 ttctgagctttcatctgatgtattggtaaatattggatcgatatccatgcgtttgttttt 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21792 ttctgagctttcatctgatgtattggtaaatattggatcgatatccatgcgtttgttttt 21851
Query: 506 gggtctttcgtagattggtgtaattggttgtagaatgtccttctctgaaaaagattctgt 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21852 gggtctttcgtagattggtgtaattggttgtagaatgtccttctctgaaaaagattctgt 21911
Query: 566 gaaattcaaatcgttcaaattatacatcttagtatgaggcanaacttcatattcagtgct 625
||||| ||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct: 21912 gaaatccaaatcgttcaaattatacatcttagtatgaggcaaaacttcatatccagtgct 21971
Query: 626 ctgagggtcacttatcttctgcacgcgtcgttgcgatgttttcgtattgctgccgacatg 685
||||||||||||||||||||||||||||||||||||||||| ||||| |||| |||||||
Sbjct: 21972 ctgagggtcacttatcttctgcacgcgtcgttgcgatgtttccgtatcgctgtcgacatg 22031
Query: 686 gctcattggatggtttccgtcagttacttcatataagggttttggcatcttttagaacct 745
||||| ||||||||| | |||||||||| ||||| || |||||| |||| ||||||||||
Sbjct: 22032 gctcaatggatggttccggtcagttactccatat-agtgttttgtcatc-tttagaacct 22089
Query: 746 acttttganaacccatttatctgcactcgt 775
|| | ||| ||| || ||||||||||||||
Sbjct: 22090 acatctgaaaacaca-ttatctgcactcgt 22118
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7082
Number of Sequences: 1807
Number of extensions: 7082
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 891
length of database: 10,358,551
effective HSP length: 16
effective length of query: 875
effective length of database: 10,329,639
effective search space: 9038434125
effective search space used: 9038434125
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)