BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC4ZF01RM1.SCF screened BAC_end
(882 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig429 1001 0.0
>3x_Contig429
Length = 1524
Score = 1001 bits (505), Expect = 0.0
Identities = 530/539 (98%)
Strand = Plus / Minus
Query: 343 cttgtgtcatgttctacctttgctgttttcgtatacacggaggaaagaccattatccact 402
||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct: 1524 cttgtgtcatgttctacctntgctgttntcgtatacacggaggaaagaccattatccact 1465
Query: 403 gatctagtcttccctgcattaactcttttcaatttattgtcattccctcttgctgttgtt 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1464 gatctagtcttccctgcattaactcttttcaatttattgtcattccctcttgctgttgtt 1405
Query: 463 cctaatgcaatctcttcatttattgaagcatctgtgtccataaatagactctttgcattt 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1404 cctaatgcaatctcttcatttattgaagcatctgtgtccataaatagactctttgcattt 1345
Query: 523 ttgactaacgaagagttgcaaaatgatgccgttttacgtgaaccaaaagtaaagaatatt 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1344 ttgactaacgaagagttgcaaaatgatgccgttttacgtgaaccaaaagtaaagaatatt 1285
Query: 583 ggtgacgaaggtgttaaagtcaacgatgcaactttcttatggcaacgcaaacctgaatat 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1284 ggtgacgaaggtgttaaagtcaacgatgcaactttcttatggcaacgcaaacctgaatat 1225
Query: 643 aaagttgccttgaaaaacataaattttgttgccaagaaaggtgaactaacatgtatcgtg 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1224 aaagttgccttgaaaaacataaattttgttgccaagaaaggtgaactaacatgtatcgtg 1165
Query: 703 gggaaagtgggtagtggtaagagtgcacttattcaaagtctactaggagatttgattaga 762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1164 gggaaagtgggtagtggtaagagtgcacttattcaaagtctactaggagatttgattaga 1105
Query: 763 gtgaagggtttcgcaactgttcacggggacgtcgccaacgtttcacaggttccatgggtt 822
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct: 1104 gtgaagggtttcgcaactgttcacggtgacgtcgccaacgtttcacaggttccatggatt 1045
Query: 823 atgaatggtactggtaaagaaaatttctggtttggtcacaagtttgatccagaatttta 881
||||||||||||| |||||| ||| ||| |||||||||||||| |||||||||||||||
Sbjct: 1044 atgaatggtactgttaaagataatatcttgtttggtcacaagtatgatccagaatttta 986
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7763
Number of Sequences: 1807
Number of extensions: 7763
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 882
length of database: 10,358,551
effective HSP length: 16
effective length of query: 866
effective length of database: 10,329,639
effective search space: 8945467374
effective search space used: 8945467374
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)